|
Name : smpB (CPS_3829) Accession : YP_270492.1 Strain : Colwellia psychrerythraea 34H Genome accession: NC_003910 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 3996097 - 3996585 bp Length : 489 bp Strand : + Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGGCTAAGAAAAAATCAAAAAGCTCTAACAGTAATACTATCGCTTTAAATAAAAAAGCGAGGCACAACTATAGCTTAAC GGACAAGTTTGAAGGCGGAATGAGCTTACAAGGTTGGGAAATTAAGAGTATTAGAAGTGGCAAAGTAAATATTTCTGACT GTTACGTACATATTAAAGACCGTGAAGCTTATTTATTAGGAGCTGAAATATCTCCTCTGAATGCTGCTTCTAGTCACGTT GTATGTGATCCAAACCGTGATAGAAAATTATTACTTAACCGAAGAGAGCTAGATAAAATCATTGCAGCTGTTGAACGTGA TGGTTACTCTTTGATTGCAACGGCTATGTACTGGAAAGCCTGTTGGGTGAAACTCGAGTTTTACTTGGGTAAAGGTAAGA AAGATCACGACAAACGTTCCGATATTAAAGACAGAGAATGGGCTGTTGATAAAGGTCGTTTAATGAAGAATAAAAACTTA GATCGATAA Protein sequence : MAKKKSKSSNSNTIALNKKARHNYSLTDKFEGGMSLQGWEIKSIRSGKVNISDCYVHIKDREAYLLGAEISPLNAASSHV VCDPNRDRKLLLNRRELDKIIAAVERDGYSLIATAMYWKACWVKLEFYLGKGKKDHDKRSDIKDREWAVDKGRLMKNKNL DR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| smpB | NP_230495.1 | SsrA-binding protein | Not tested | VPI-1 | Protein | 2e-39 | 56 |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 1e-19 | 41 |
