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Name : CPS_2917 (CPS_2917) Accession : YP_269617.1 Strain : Colwellia psychrerythraea 34H Genome accession: NC_003910 Putative virulence/resistance : Unknown Product : phage integrase family site specific recombinase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0582 EC number : - Position : 3050704 - 3051951 bp Length : 1248 bp Strand : + Note : identified by match to protein family HMM PF00589 DNA sequence : ATGGCTAGAAAAGTAAAACCTCTTACCAATACTGAAGTTAAGCAGGCAAAGCCTAAAGATAAGATTTACAAGTTATCTGA CGGCGATGGCTTACAATTGCGCATAATGCCAAATGGCTCTAAACAATGGCTGTTAGACTACTTCAAACCTTACACAAAAA AACGTACCTCATTCAGCTTAGGATCATACCCTGATGTTACATTAGCCAATGCAAGAGCCAAGCGTGCATCTTCAAGAGAA CTTTTAGCTCAAGACATCGACCCCAAAGAACATAAAGAAGACCACCACCGTGAACAATTGCTTATCGCTAGCCACACTTT AAAGAGTGTTGCTGAAGATTGGTTTGCCATCAAAAAGACCACGATTACAGAAGTTACTGCTAAAAGCCTATGGCGTAAGT TTGAAAACCACGTTTTTCCAAAGCTAGGCCACAGGCCAATAGACAAAATATTAGCACCAGAGGCTATTGAAGCACTTAAG CCTTTAGCTGCTAAAGGTAACCTAGAAACAACAGGTAAAATCATTGGCCATTTAAACAACATAATGACCCATGCCGTAAA TACGGGGATATTACATCACAATCCGTTATCAGGGATTCGTAGCGCATTCTCAGCCCCTAAAGTAACTAATATGCCCACCA TTAAGCCTAATGAATTAGGTAAGCTAATGAAGGTCATCAGTTACGCCAGCATTAAGCTAGTCACCAGATGTTTAATTGAG TGGCAACTTCACACAATGACCAGGCCCAGCGAAAGCGCTAAAGCTGAGTGGTCAGAAATAGATTTAGAGAATAGATTATG GGTTATTCCTGCTGAACGTATGAAAATGAGATTAGAGCATAAAGTACCACTGACCAAACAATCCATTGAAATACTTGAAC GATTAAAGCCAATTACAGGCCATCGAACACACCTATTCCCTTCCCACATTAATCACCATAAACACTGCAACGTTGAAACA GCAAACAAAGCATTAATACGTATGGGCTATAAAAACAGATTAGTCGCTCATGGCTTACGTGCTTTAGCTAGCACTACTTT AAACGAACAAGAGTTTAATGCTGATGTTATCGAGTCTGCACTATCTCATGTCGATAAAAATGAAGTTAGACGTGCCTACA ATCGTGCAGAATACCTTGATAGCAGGCGTGAACTAATGTGCTGGTGGAGTGAGCATATAGAGCAGGCAGTAAGTGGCAAC TTACCTGTCTCAACGTTAAAAGAGCAAAAGATAATCTGCAACGAATGA Protein sequence : MARKVKPLTNTEVKQAKPKDKIYKLSDGDGLQLRIMPNGSKQWLLDYFKPYTKKRTSFSLGSYPDVTLANARAKRASSRE LLAQDIDPKEHKEDHHREQLLIASHTLKSVAEDWFAIKKTTITEVTAKSLWRKFENHVFPKLGHRPIDKILAPEAIEALK PLAAKGNLETTGKIIGHLNNIMTHAVNTGILHHNPLSGIRSAFSAPKVTNMPTIKPNELGKLMKVISYASIKLVTRCLIE WQLHTMTRPSESAKAEWSEIDLENRLWVIPAERMKMRLEHKVPLTKQSIEILERLKPITGHRTHLFPSHINHHKHCNVET ANKALIRMGYKNRLVAHGLRALASTTLNEQEFNADVIESALSHVDKNEVRRAYNRAEYLDSRRELMCWWSEHIEQAVSGN LPVSTLKEQKIICNE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| VC0847 | NP_230494.1 | phage family integrase | Not tested | VPI-1 | Protein | 1e-113 | 53 |
| VC0395_A0372 | YP_001216328.1 | phage family integrase | Not tested | VPI-1 | Protein | 1e-113 | 53 |
| int | AAK20773.1 | integrase | Not tested | VPI | Protein | 9e-114 | 53 |
| int | AAK20803.1 | integrase | Not tested | VPI | Protein | 9e-114 | 53 |
| unnamed | AAA82714.1 | integrase | Not tested | VPI | Protein | 9e-114 | 53 |
| VC0516 | NP_230167.1 | phage integrase | Not tested | VSP-2 | Protein | 5e-103 | 52 |
| VPI2_0001 | ACA01818.1 | phage family integrase | Not tested | VPI-2 | Protein | 5e-98 | 52 |
| VC1758 | NP_231394.1 | phage family integrase | Not tested | VPI-2 | Protein | 6e-98 | 52 |
| VC0395_A1357 | YP_001217300.1 | phage family integrase | Not tested | VPI-2 | Protein | 6e-98 | 52 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| CPS_2917 | YP_269617.1 | phage integrase family site specific recombinase | VFG1092 | Protein | 3e-98 | 52 |
