Gene Information

Name : CPS_2640 (CPS_2640)
Accession : YP_269354.1
Strain : Colwellia psychrerythraea 34H
Genome accession: NC_003910
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 2743200 - 2743853 bp
Length : 654 bp
Strand : +
Note : identified by match to protein family HMM PF00005

DNA sequence :
GTGATTGAAGTAAAAGATTTATGTTTCATTCGTAATGATGGCGATAACAAACAAAGTATTTTAAATAAGCTAGATTTGTC
TATACCCGAAGCACAGCATCTTGCATTACTTGGTGATAGTGGCTCAGGTAAAACCACCTTTTTGCACATTTTGGCGGGCC
TGCTGCAAGCAGATAGCGGCTCAGTCAGTGTTAACAACCAAGAGTTATCATTGCTTAATGAGCGAGAACTCGCGCTTTAT
CGCCGTAAAATTGGTCTTATATTTCAGCATTACCAATTGCTTGATTGCCTCACCGTAAAACAAAATATTTTATTCCAGCA
CAAGCTAAACTTTCCAGGTGAAGCCGCGAGTGAGTTTGACCATCTCGTCAATGAGTTAGGGCTACAAAATAAGCTTAATG
CCCTGCCTCATCAACTGTCAGGTGGTGAACAACAAAGAGTGGGTATCGCCAGAGCCTTACTTAACAAACCTCAAATTATT
TTTGCCGATGAGCCTACTGGCAACTTAGATCAAAAGCGTTCGCACCAAGTGGTTAAACTACTTACCGAGTTATGCCATGC
ACGACAAATTAACCTAGTCATGGTGACTCATAGTCATCAATTAACTGATTATTTTGATCAAGTTAAAGTGTTAAGAGATG
GTCGTTTTGACTAG

Protein sequence :
MIEVKDLCFIRNDGDNKQSILNKLDLSIPEAQHLALLGDSGSGKTTFLHILAGLLQADSGSVSVNNQELSLLNERELALY
RRKIGLIFQHYQLLDCLTVKQNILFQHKLNFPGEAASEFDHLVNELGLQNKLNALPHQLSGGEQQRVGIARALLNKPQII
FADEPTGNLDQKRSHQVVKLLTELCHARQINLVMVTHSHQLTDYFDQVKVLRDGRFD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-29 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 1e-29 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-29 42
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-28 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CPS_2640 YP_269354.1 ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 1e-33 43