Gene Information

Name : CPS_2309 (CPS_2309)
Accession : YP_269029.1
Strain : Colwellia psychrerythraea 34H
Genome accession: NC_003910
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4181
EC number : -
Position : 2407727 - 2408440 bp
Length : 714 bp
Strand : +
Note : identified by match to protein family HMM PF00005

DNA sequence : 
ATGTCAGTACTTTCTCAGTTAAATGTTATTCAAGTGTCAGGGCTTACTAAGCGTGTTAGTACACTTGAAGGAAGCCTTAC
TATCCTTAGCGATATAAACTTTTCTGTCAAGTCGGGAGAATCAGTAGCTATTGTTGGTGCTTCAGGTTCAGGTAAATCTA
CGTTATTAAGTTTATTAGCTGGATTAGATGTTGCGAGTCAAGGTGATGTGCACCTCGATGGCGAAGCCTTAAGCACACTT
GATGAAGAAGCGCGTGCTCAGGTAAGAGCAGAAAAAATTGGCTTTGTTTTTCAATCATTTATGTTAGTGCAAAGTTTAAC
CGCACTTGAAAATGTAATGTTGCCAGCAGAGCTCGCAGGCGATCATGATGCTAAAGCCCAAGCAATTGAGTTATTGGATA
AAGTAGGACTGTCACATAGGCTTGAGCATTACCCATCTCAACTATCAGGAGGTGAGCAGCAGAGAGTTGCAATTGCGAGA
GCATTCATTGGCTCACCTAAGATACTTTTCGCTGATGAGCCTTCAGCGAATCTCGATAGTAAAAATGGACATCTGATTGA
AACATTATTATTTGATTTAAATAAACAAAATGGAACTACGTTAGTACTAGTGACTCACGACGAACAGTTAGCGAAGCAAT
GCCAGCGCATTATACATATTGAAGGTGGTCAATTGGAAAAAATTAGTGAAGGAGCAGCTGTCAATGTGGGTTAA

Protein sequence : 
MSVLSQLNVIQVSGLTKRVSTLEGSLTILSDINFSVKSGESVAIVGASGSGKSTLLSLLAGLDVASQGDVHLDGEALSTL
DEEARAQVRAEKIGFVFQSFMLVQSLTALENVMLPAELAGDHDAKAQAIELLDKVGLSHRLEHYPSQLSGGEQQRVAIAR
AFIGSPKILFADEPSANLDSKNGHLIETLLFDLNKQNGTTLVLVTHDEQLAKQCQRIIHIEGGQLEKISEGAAVNVG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-26 44
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-27 43
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 3e-27 43
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-27 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CPS_2309 YP_269029.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 1e-30 48
CPS_2309 YP_269029.1 ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 8e-29 45
CPS_2309 YP_269029.1 ABC transporter ATP-binding protein NC_012469.1.7685735. Protein 1e-29 42