|
Name : kdsB (CPS_2128) Accession : YP_268854.1 Strain : Colwellia psychrerythraea 34H Genome accession: NC_003910 Putative virulence/resistance : Virulence Product : 3-deoxy-D-manno-octulosonate cytidylyltransferase Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1212 EC number : 2.7.7.38 Position : 2221756 - 2222598 bp Length : 843 bp Strand : + Note : identified by similarity to SP:P04951; match to protein family HMM PF02348; match to protein family HMM TIGR00466 DNA sequence : ATGACTGCTAGTGACCCTTCAGTATTGAGTAAACCAGCTACTGGTGATACCAGCTTTGTTGTTGTTATCCCTGCTAGATA TCAATCATCTCGTTTGCCAGGTAAGGTGTTAGCCGACATCGATGGCAAACCGATGATCCAATGGGTTGTTGAAAAGGCGC AATTAAGTGGTGCTCGCCAAGTCATTGTTGCGACAGACAATGATGAAGTTGCTGCAGTAGTAAACAGTTTTGGCGCTGAA GTGTGTAAAACACGTGCGGATCATCAATCGGGCACTGAACGTCTTGCAGAAGTCATGGAAAAATATCAATTCAGTGACGA TGAAATCATTGTTAATGTACAAGGTGATGAACCTTTTATTCCGCCAGACAATATCGCACAAGTAGCGAATAATCTAGCTA ACCAGCAACAAAGTAGTCATGTAGCACGCATGTCGACCTTGGCTATTAATATTGACTCTGTAGATGAAGCGTTTAATCCT AATGCCGTTAAAGTAATACTTGATAAAGATGGTTATGCCTTATATTTCTCTAGAGCAACTATTCCTTATGATAGAGAGCG TTTTTTAAATTCAGATGCTACTACAGAAGAAAATATTCGCGCAATAGGTGATTTTTACTTAAGACACGTCGGCATTTATG CTTATCGCGCTGGCTTCATTAAAGATTATGTCAATTGGCCCACAAGTGAATTAGAACAAGTTGAAGCGCTAGAGCAGCTA AGAGTTTTATATCAAGGAGAGAGAATTCACGTCGCGGTCGCAAATAGCCACGTACCTGTTGAAGGTGTTGATACTCCAGA AGATTTAGCCAAAGCAAGAGCATACGCGACTAGCTTAGTGTAG Protein sequence : MTASDPSVLSKPATGDTSFVVVIPARYQSSRLPGKVLADIDGKPMIQWVVEKAQLSGARQVIVATDNDEVAAVVNSFGAE VCKTRADHQSGTERLAEVMEKYQFSDDEIIVNVQGDEPFIPPDNIAQVANNLANQQQSSHVARMSTLAINIDSVDEAFNP NAVKVILDKDGYALYFSRATIPYDRERFLNSDATTEENIRAIGDFYLRHVGIYAYRAGFIKDYVNWPTSELEQVEALEQL RVLYQGERIHVAVANSHVPVEGVDTPEDLAKARAYATSLV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| kpsU | AAZ04469.1 | CMP-KDO synthetase | Virulence | PAI I APEC-O1 | Protein | 4e-36 | 45 |
| kpsU | YP_854332.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | Not tested | PAI I APEC-O1 | Protein | 6e-36 | 45 |
| kpsU | CAE85213.1 | KpsU protein | Virulence | PAI V 536 | Protein | 1e-35 | 45 |
