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Name : gabD1 (CPS_2023) Accession : YP_268752.1 Strain : Colwellia psychrerythraea 34H Genome accession: NC_003910 Putative virulence/resistance : Unknown Product : succinate-semialdehyde dehydrogenase Function : - COG functional category : C : Energy production and conversion COG ID : COG1012 EC number : 1.2.1.16 Position : 2094534 - 2096006 bp Length : 1473 bp Strand : + Note : identified by match to protein family HMM PF00171; match to protein family HMM TIGR01780 DNA sequence : ATGCAAGAACATCAGGAATTAGGTTTACAAGATAACCAATTAGTTAGAAGTTTTTCGTATATCAATGGTCGTTGGCATAG TAGTGATTCATACATTTCAGTGACAAACCCAGCCAATGGCAAGGTGATTGCTCAAGTGAGCAATGCAGGTGTTGTTGAAA CCGAACTTGCAGTAAAAGCCGCAAAAGATGCTTTAAAAATGTGGTCAGCTAAATCTGCTAATGAACGAGCTACGTTAATG AGAAACTGGTTTAACTTGATTATGGAAAATCAAGATGATTTAGGACGCATTTTAACTTTAGAGCAAGGTAAACCTCTTGC TGAAGCTAAAGGCGAAATTGGTTACGGTGCAGCGTTTATTGAATGGTTTGCTGAAGAAGGTAAACGCGTTTATGGCGATA CTATTCCAGCTCCATCGGGTGACAAACGTATTATTGTTATTAAACAACCAGTAGGTGTTGTTGCGTCTGTTACCCCGTGG AACTTTCCAAATGCAATGATTGCACGTAAAGCTGCAGCTGCATTATCGGCGGGTTGTACTTTTGTTGTTCGTCCTGCAAC ACAAACGCCACTTTCTGCCTTAGCAATGGCTGAGCTTGCAGAGCGTGCTGGTATTCCAGCAGGTGTTTTTAATGTGGTAG TTGGTGAAGATGCTCACGGTATAGGTAAAGTATTAACCCAACACCCTGATATTGCTAAGTTCACTTTTACGGGCTCAACC CCTGTGGGTAAAGCGTTGATCAGTCAATGTGCTACATCAGTGAAAAAAGTTTCAATGGAACTTGGTGGTAATGCACCTTT TATTGTATTTGATGACGCTGATATTGATGCGGCTGTACAGGGCGCCTTAGTTTCAAAATACCGTAATGCAGGTCAAACAT GTGTTTGTACTAATCGTATTTTTGTACAAAAAGGTGTTATTGAACAATTTACTAAAAAATTCACGTCTGCAGTTGCGGCA TTAGCAATAGGTGATGGTTTAACTGATGGCGTTAGTATTGGTCCTATGATCTCAAGTGATGCGGTCTGCGATGTTGAACT TTTAGTGAAAGACTCAATTACTGCAGGTGCAATATTAGCTTTAGGTGGTGAGCGAGACCAAGCAGGTGATGCTTTTTATC AACCGACTATTTTAACCAATGTTACAAATGATATGCCTATTGCCAAAAATGAAATTTTTGGTCCTGTTACCCCGATTATT TCTTTTGAAGATGAAGATGAAGTTATCGCTATGGCAAATGATACTGAATATGGCTTAGCCTCTTATTTTTATGCGAGAGA TATTGGCCGAATTTGGCGGGTTGCAGAGGGGTTAGAGTATGGCATGGTAGGTATTAACGAAGGCATGATTTCAAATGCGG CAGCACCTTTTGGCGGCGTTAAGCAATCAGGTAACGGCCGTGAAGGCTCAAAATATGGCTTAGATGATTATTTAGAAATC AAATACTTGTGCATGGGTGGCTTAGGTAAATAG Protein sequence : MQEHQELGLQDNQLVRSFSYINGRWHSSDSYISVTNPANGKVIAQVSNAGVVETELAVKAAKDALKMWSAKSANERATLM RNWFNLIMENQDDLGRILTLEQGKPLAEAKGEIGYGAAFIEWFAEEGKRVYGDTIPAPSGDKRIIVIKQPVGVVASVTPW NFPNAMIARKAAAALSAGCTFVVRPATQTPLSALAMAELAERAGIPAGVFNVVVGEDAHGIGKVLTQHPDIAKFTFTGST PVGKALISQCATSVKKVSMELGGNAPFIVFDDADIDAAVQGALVSKYRNAGQTCVCTNRIFVQKGVIEQFTKKFTSAVAA LAIGDGLTDGVSIGPMISSDAVCDVELLVKDSITAGAILALGGERDQAGDAFYQPTILTNVTNDMPIAKNEIFGPVTPII SFEDEDEVIAMANDTEYGLASYFYARDIGRIWRVAEGLEYGMVGINEGMISNAAAPFGGVKQSGNGREGSKYGLDDYLEI KYLCMGGLGK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| orf17 | AAO17183.1 | Orf17 | Not tested | tcd island | Protein | 5e-133 | 59 |
| cur_1509 | YP_001800903.1 | NAD-dependent aldehyde dehydrogenase | Not tested | Not named | Protein | 8e-83 | 42 |
