|
Name : CPS_1896 (CPS_1896) Accession : YP_268626.1 Strain : Colwellia psychrerythraea 34H Genome accession: NC_003910 Putative virulence/resistance : Unknown Product : ISCps9, transposase orfB, truncated Function : - COG functional category : L : Replication, recombination and repair COG ID : COG2801 EC number : - Position : 1956282 - 1957082 bp Length : 801 bp Strand : + Note : identified by similarity to OMNI:NTL01RS0578; match to protein family HMM PF00665 DNA sequence : GTGTCCGTTTTATCGGGGGAAGATCACTTTTATGCATGGCGACGACGTCCACGTTCAATGCGTGCTATTAATGATGCGGA TTTACTTTTAAATATCAAACAAGTCTTTAATAACAATCATCAAACCTACGGCAGCCCACGCGTATTTCATGCATTAAAGC GTGAAGGTATTACAACGAGTGAGAAGCGTGTTGCACGGTTGATGCGAGAAAATGGCTTACGCGCTAGAGCGCTCAAGACT TATAGCAGGCCAGCTAAGGTGAAGTTCTTTTATAAAGCGATCAAAAACAATCGTAAAAACATAAGTAAGCCTGATGCTAT CAATCAGCAATGGTCGGGAGATATTACGTACCTGAAAGTAGGATCGCGCTGGTATTACTTAGCCGTTGTATTAGATTTAT TTTCACGTCGTATCATTGGTTGGGCTTTTGGTCAGAACAAATCAACAGCGCTGACACTGAAAGCGCTGCAGCTAGCAATA AAGAAGCGTAAACCGACACAACCCTTGTTATTTCATACTGACAGAGGCGCTGAATATCGAGCACATGTAGTGCAGCAGTT CTTAGTTAAACATAACATTACGGCGAGTATGAACCGTCCAGGTTGTTGTACTGATAATGCTGAAGTTGAATCATTTTTTC ATTCATTAAAAGCTGATTTAATCAGAGGGAATGTCTTCGCGACTACTGATAAATTACATTCAAAATTAAAAGGTTACATG AACTATTTTTACAATAGACAACGATTGCATTCAAGTTTAGGATATAAAACACCTGCTGAGTTTGAATTGGCGGTGAATTA A Protein sequence : MSVLSGEDHFYAWRRRPRSMRAINDADLLLNIKQVFNNNHQTYGSPRVFHALKREGITTSEKRVARLMRENGLRARALKT YSRPAKVKFFYKAIKNNRKNISKPDAINQQWSGDITYLKVGSRWYYLAVVLDLFSRRIIGWAFGQNKSTALTLKALQLAI KKRKPTQPLLFHTDRGAEYRAHVVQQFLVKHNITASMNRPGCCTDNAEVESFFHSLKADLIRGNVFATTDKLHSKLKGYM NYFYNRQRLHSSLGYKTPAEFELAVN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tnpA1133 | ACK44540.1 | TnpA | Not tested | SGI1 | Protein | 1e-39 | 42 |
| orfB | AGK07032.1 | IS1133 transposase; OrfB | Not tested | SGI1 | Protein | 1e-39 | 42 |
| orfB | AGK07090.1 | IS1133 transposase; OrfB | Not tested | SGI1 | Protein | 1e-39 | 42 |
