Gene Information

Name : CPS_1379 (CPS_1379)
Accession : YP_268122.1
Strain : Colwellia psychrerythraea 34H
Genome accession: NC_003910
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : S : Function unknown
COG ID : COG3272
EC number : -
Position : 1419586 - 1420545 bp
Length : 960 bp
Strand : +
Note : identified by similarity to OMNI:SO3386

DNA sequence : 
ATGATTTATTCAGTGGATAAGAAAGACATAGAAATTGGTATTAGCGCTTGTTTAATTGGTGAAAAGGTTCGGTTTGATGC
CAGTAATAAACCGTCTCATTTTTGTATTAAAGAATTTTCAGAACATGTTTCATATAAGTCATTTTGCCCAGAAGTTGCTG
TAGGTTTACCTATTCCTAGACCAACCATTCGTCAAATAAAGCGTGATGATGTTATTCATGTTTCTCAAAAAGATGGCAGT
GGCGATGTTACCGAGGCCTTAAAAGCGTATGGAAAAAAAGTAGCCAGCATGACCAAATCGTTAAGTGGTTATATTTTTTG
CGCTAAAAGCCCAAGTTGCGGCATGGAAAGAGTTAAGATTTATAGCCCCGAAGGTAACTCATTACCCTCAAAAGGTATCG
GTGCTTTTGCCAAAGAAATTATGGATGCTAACCCGTTATTACCTTGCGAAGAAAATGGCCGTCTAAACGATCCTCTACTG
CGTGAAAACTTTGTTGCCAGAGTATTTGCTTATAAACATTGGCAAACGATTGTTGAATCAGGATTAACTAAGCACAAGTT
AACCACCTTTCATAGCCATTACAAGTATACGGTGATGAGCCACGATTTAATCGCCTATAAAGAGTTAGGGCAATTATTAG
CAAGAGCTGATTTACCCCTTGATGAGGTGGCGGCGCAATATATTTTAGGATTAATGACGGCACTGAAAATTATAGCGACC
CGTAAAAAGCATGCTAATACACTGGCGCATATTCAAGGATACTTTTCAAAGCACTTACAAGCGAATGAAAGACAGGAATT
ATGTGAACAAATTGATGCTTATCGCGAAGGACTTATTCCGTTAATGGCACCTTTAACGTTAATTAAGCATTATCTACTTA
ATCATCCAAAAGACTATTTAACAAAGCAAGCGTACTTATCTCCTTACCCTGATAAATTAAGATTGAGATACGCTTACTAA

Protein sequence : 
MIYSVDKKDIEIGISACLIGEKVRFDASNKPSHFCIKEFSEHVSYKSFCPEVAVGLPIPRPTIRQIKRDDVIHVSQKDGS
GDVTEALKAYGKKVASMTKSLSGYIFCAKSPSCGMERVKIYSPEGNSLPSKGIGAFAKEIMDANPLLPCEENGRLNDPLL
RENFVARVFAYKHWQTIVESGLTKHKLTTFHSHYKYTVMSHDLIAYKELGQLLARADLPLDEVAAQYILGLMTALKIIAT
RKKHANTLAHIQGYFSKHLQANERQELCEQIDAYREGLIPLMAPLTLIKHYLLNHPKDYLTKQAYLSPYPDKLRLRYAY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SC1410 YP_216397.1 inner membrane protein Not tested SPI-2 Protein 3e-69 46
orf319 NP_460354.1 inner membrane protein Not tested SPI-2 Protein 2e-69 46
ORF 319 CAB37410.1 - Not tested SPI-2 Protein 2e-69 46
STY1731 NP_456139.1 putative pathogenicity island protein Not tested SPI-2 Protein 3e-69 46
t1257 NP_805060.1 pathogenicity island protein Not tested SPI-2 Protein 3e-69 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CPS_1379 YP_268122.1 hypothetical protein VFG0490 Protein 9e-70 46