Gene Information

Name : CPS_1159 (CPS_1159)
Accession : YP_267902.1
Strain : Colwellia psychrerythraea 34H
Genome accession: NC_003910
Putative virulence/resistance : Virulence
Product : DNA-binding protein
Function : -
COG functional category : K : Transcription
COG ID : COG1476
EC number : -
Position : 1181089 - 1181292 bp
Length : 204 bp
Strand : -
Note : identified by match to protein family HMM PF01381

DNA sequence :
ATGAAAAACCGCTTAAAAGTATTACGTGCTGAACGTGACTGGACACAAGCTCAACTTGCTAGTGCCCTAGAAGTATCAAG
GCAAACAATTAATGCTATTGAAAAAGGTAAGTTTGATCCAAGCTTACCACTAGCATTTAAAGCAGCAAGACTATTTAATT
TAATGATTGAAGATATCTTTCATGATGAAGTTGAAACACTATAA

Protein sequence :
MKNRLKVLRAERDWTQAQLASALEVSRQTINAIEKGKFDPSLPLAFKAARLFNLMIEDIFHDEVETL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ef0042 AAM75247.1 EF0042 Virulence Not named Protein 2e-08 53
EF0524 NP_814301.1 Cro/CI family transcriptional regulator Not tested Not named Protein 3e-08 53
SH2314 YP_254229.1 hypothetical protein Not tested ¥ðSh1 Protein 5e-11 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CPS_1159 YP_267902.1 DNA-binding protein VFG2168 Protein 7e-09 53
CPS_1159 YP_267902.1 DNA-binding protein VFG2175 Protein 7e-09 53