|
Name : XCC3496 (XCC3496) Accession : NP_638842.1 Strain : Xanthomonas campestris ATCC 33913 Genome accession: NC_003902 Putative virulence/resistance : Unknown Product : ISxac3 transposase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG2801 EC number : - Position : 4162890 - 4163744 bp Length : 855 bp Strand : + Note : - DNA sequence : ATGCAAGCCCACTGCGGGGAATTCAGGGTGTGTGCAATGTGCCGGGTATTGCGGGTCAACCGGTCGGGTTATTACGCTTG GTTGTGCTCGCCCAACAGTGAGCGCGCCAAGGAAGATGATCGCTTGCTTGGACTAATCAAGCACCACTGGCTGGCCAGCG GCAGTGTCTATGGGCATCGCAAGATCACCACGGATCTGCGCGATCTGGGTGAGCGTTGTAGTCGTCATCGGGTGCATCGG CTGATGCGCACCGAGGGACTGCGTGCCCAGGTGGGCTATGGTCGCAAACCGCGCTTCCATGGAGGAATGCAGTGCAAGGC GGCGGCCAACCTGCTTGACCGACAGTTCGACGTGACGGAGCCGGACACGGCCTGGGCGAGCGATTTCACCTTCATCCGCA CGCATGAAGGCTGGATGTATTTGGCTGTTGTGATCGATCTGTTTTCCAGGCAGGTCGTCGGCTGGGCGATGCGCGATCGG GCCGACACCGAGTTGGTCGTGCAGGCGGTGTTGTCTGCGGTGTGGCGGCGCAAACCCAACGCTGGTTGCTTGGTTCATTC GGACCAAGGGTCTGTCTACACCAGCGATGACTGGCGCAGTTTCCTGGCGTCCCATGGCTTGGTGTGCAGCATGAGTCGGC GTGGCAACTGCCACGACAACGCACCCGTGGAGAGCTTCTTCGGCCTGCTCAAACGCGAGCGGATCAGGCGGCTGACCTAT CCCACCAAGGACGCCGCTCGCGCCGAGGTATTCGACTACATCGAGATGTTCTACAACCCCAACCGCCGCCACGGTTCAAC TGGCGACCTGTCACCTGTAGAGTTTGAACGGCGCTACGCGCAACGAGGGTCTTGA Protein sequence : MQAHCGEFRVCAMCRVLRVNRSGYYAWLCSPNSERAKEDDRLLGLIKHHWLASGSVYGHRKITTDLRDLGERCSRHRVHR LMRTEGLRAQVGYGRKPRFHGGMQCKAAANLLDRQFDVTEPDTAWASDFTFIRTHEGWMYLAVVIDLFSRQVVGWAMRDR ADTELVVQAVLSAVWRRKPNAGCLVHSDQGSVYTSDDWRSFLASHGLVCSMSRRGNCHDNAPVESFFGLLKRERIRRLTY PTKDAARAEVFDYIEMFYNPNRRHGSTGDLSPVEFERRYAQRGS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| trp1329B | CAB46576.1 | IS1329 transposase B | Not tested | HPI | Protein | 5e-38 | 43 |
| tnpB | CAB61574.1 | transposase B | Not tested | HPI | Protein | 3e-38 | 43 |
| unnamed | AAC31485.1 | L0006 | Not tested | LEE | Protein | 8e-29 | 43 |
| ECs4537 | NP_312564.1 | hypothetical protein | Not tested | LEE | Protein | 1e-28 | 43 |
| unnamed | CAI43898.1 | putative transposase | Not tested | LEE | Protein | 3e-29 | 43 |
| aec65 | AAW51748.1 | Aec65 | Not tested | AGI-3 | Protein | 3e-29 | 43 |
| unnamed | ACU09432.1 | IS911 transposase orfB | Not tested | LEE | Protein | 8e-29 | 42 |
| Z5089 | NP_290241.1 | transposase | Not tested | LEE | Protein | 1e-28 | 42 |
| orfB | AGK06993.1 | IS1359 transposase; OrfB | Not tested | SGI1 | Protein | 5e-35 | 42 |
| orfB | AGK07051.1 | IS1359 transposase; OrfB | Not tested | SGI1 | Protein | 5e-35 | 42 |
| orfB | ACX47958.1 | IS1359 transposase; OrfB | Not tested | SGI1 | Protein | 5e-35 | 42 |
| VPI2_0008c | ACA01825.1 | transposase OrfAB subunit B | Not tested | VPI-2 | Protein | 5e-35 | 42 |
| orfB | AGK06910.1 | IS1359 transposase; OrfB | Not tested | SGI1 | Protein | 5e-35 | 42 |
| VC1789 | NP_231424.1 | transposase OrfAB subunit B | Not tested | VPI-2 | Protein | 7e-35 | 42 |
| overlap with orfA characteristic of IS3 family members | AGK06947.1 | IS1359 transposase; OrfB | Not tested | SGI1 | Protein | 5e-35 | 42 |
| orfB | YP_001217329.1 | transposase OrfAB subunit B | Not tested | VPI-2 | Protein | 7e-35 | 42 |
| unnamed | AAL57581.1 | transposase 1 | Not tested | LEE | Protein | 1e-39 | 41 |
| unnamed | AAL57519.1 | transposase 1 | Not tested | LEE | Protein | 2e-39 | 41 |
| ECO111_3779 | YP_003236114.1 | putative IS602 transposase OrfB | Not tested | LEE | Protein | 6e-31 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| XCC3496 | NP_638842.1 | ISxac3 transposase | VFG0785 | Protein | 5e-29 | 42 |
| XCC3496 | NP_638842.1 | ISxac3 transposase | VFG1122 | Protein | 3e-35 | 42 |
