Gene Information

Name : XCC2189 (XCC2189)
Accession : NP_637545.1
Strain : Xanthomonas campestris ATCC 33913
Genome accession: NC_003902
Putative virulence/resistance : Virulence
Product : epimerase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG1086
EC number : -
Position : 2581682 - 2583520 bp
Length : 1839 bp
Strand : -
Note : -

DNA sequence :
ATGGTCTGGGTGTGCTGGCAGCTGCTGCATGCGGGCCGTTACTCCATGCTGCGCGACGCGCCAGACCTGCCACTGTGGGA
TTGGCGTACGGCGGTGGTCTTGGTCGCACAGGGGCTGGTGTTCTGGCGGATGGGGTTGTATCGCGGCCTCTGGCGCTTTG
CCTCGGTGCCGGATCTGTGGAACATCTTCAAGTCCAGTTTTCTCGGCCTGGTCGCGATTGTGCTGGCGTTGTCGTACGAC
CGCCTTGATGGCGTGCCGCTCTCGGTGCTGGTGGTCTATCCGTTTGCGCTGTCGGCGTTGCTCGGCACGCCGCGGTTGCT
CTACCGCGCCTGGAAGGATTACCAAATTGCCCACTCTGGCGATGCCGCGCAGCGGGTGCTGATTCTTGGCGCAGGGCGTG
CGGCCGAGGGTCTGGTGCGTGACCTGCGCCGTAGCGGCACGTTCGTCCCGGTCGGCTTTCTGGATGACGCCACCCATTTG
CACGGCGCCAAGATCCAGGGCCTGAATGTGCTGGGCAACCTGGATCAGGCCGCGGCGATCGCCAAGGAAACTGCGGCCAA
GCTCCTCGTCATCGCGATTCCATCGTTGGATGCATCCGGCATGCAGCGGGTGGTGGCCATCTGCGAAAGCACCGGTCTGC
CGTTCCGGATGGTGCCCAAGCTGATCAACGTGCTGGAGGGCCGGTCGCTGCCAGGCGAGTTGAAGGAAGTGGCGATCGAG
GACCTGCTCAACCGCAAGCCGGTCACGCCGGACTGGCGCCTGATCCGCGACTGGCTCACCAACAAGACCGTGATGGTGAC
CGGCGCCGGCGGTTCGATCGGCTCGGAAGTCTGCCGGCAGTGCGCGCGTCATGGCGCGCGTCGCATCGTGCTGCTGGAAA
TCGATGAGCTGGCGCTGCTGACCATCGATTCGGACCTGCGCCGGTTGTTCCCCGATATCGAAGTGGTGCGCGTGCTTGGC
GACTGCGGCGACCCGGCAGTGGTGGCGCATGCCTTACGCACTGCTACGCCCGATGCCGTGTTCCATGCGGCCGCCTACAA
GCAGGTGCCGCTGCTGGAAGAGCAGCTGCGCGAAGCGGTGCGCAACAACGTGCTCGCAACCGAGAACGTGGCGCGTGCCT
GCCAGCGGGCGCGGATCGAAACGTTTGTGTTCATCTCCACCGACAAGGCGGTGGAGCCGGTCAACGTGCTCGGCGCGAGC
AAGCGCTATGCGGAGATGATCTGCCAGAGTCTTGACGCCCGCGATGCGCCGACGCGCTTCATTACCGTGCGCTTCGGCAA
CGTGCTGGATTCGGCCGGCAGCGTGGTGCCGTTGTTCCGTGAACAGATCCGGCAGGGCGGCCCGGTCACGGTGACGCATC
CGGATGTGACGCGTTACTTCATGACCATTCCCGAAGCCTGCCAGCTGGTGGTGCAGGCCGCAGCATCTGCGTCGCACGGC
GCCATCTATACGCTGGACATGGGCGAGCCGGTGCCGATCCGGCTCCTGGCCGAGCAGATGATCCGCCTGGCAGGCAAGCA
GCCGGGCAAGGACATCGCCATTCTCTACACCGGTCTGCGCCCGGGCGAAAAATTGCACGAGACCTTGTTCTATTCCGACG
AGGACTACCGACCCACCGCGCATCCCAAGATCCTGGAAGCCGGTGTGCGCGAGTTCTCGCACGAGCAGGTGTTGCAACTG
GTGACGCGCCTGCGCGAGGCGGTTAACCGCTATGACATCAACGCAATGGAGACTGTGCTGGGCAGTCTGATGCCGGATTT
TGCGGCTGCTCGACGGAAAGTCGACACGCGATCTGATACGGTCGTTCCATTCCCCGCACGTGAGGTCAGAAGACTTTAA

Protein sequence :
MVWVCWQLLHAGRYSMLRDAPDLPLWDWRTAVVLVAQGLVFWRMGLYRGLWRFASVPDLWNIFKSSFLGLVAIVLALSYD
RLDGVPLSVLVVYPFALSALLGTPRLLYRAWKDYQIAHSGDAAQRVLILGAGRAAEGLVRDLRRSGTFVPVGFLDDATHL
HGAKIQGLNVLGNLDQAAAIAKETAAKLLVIAIPSLDASGMQRVVAICESTGLPFRMVPKLINVLEGRSLPGELKEVAIE
DLLNRKPVTPDWRLIRDWLTNKTVMVTGAGGSIGSEVCRQCARHGARRIVLLEIDELALLTIDSDLRRLFPDIEVVRVLG
DCGDPAVVAHALRTATPDAVFHAAAYKQVPLLEEQLREAVRNNVLATENVARACQRARIETFVFISTDKAVEPVNVLGAS
KRYAEMICQSLDARDAPTRFITVRFGNVLDSAGSVVPLFREQIRQGGPVTVTHPDVTRYFMTIPEACQLVVQAAASASHG
AIYTLDMGEPVPIRLLAEQMIRLAGKQPGKDIAILYTGLRPGEKLHETLFYSDEDYRPTAHPKILEAGVREFSHEQVLQL
VTRLREAVNRYDINAMETVLGSLMPDFAAARRKVDTRSDTVVPFPAREVRRL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cap1D AAA64643.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 3e-79 43
SSP0063 YP_300153.1 capsular polysaccharide biosynthesis protein Not tested SCC15305cap Protein 4e-73 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XCC2189 NP_637545.1 epimerase VFG1300 Protein 2e-76 44