Gene Information

Name : kdsB (XCC2118)
Accession : NP_637479.2
Strain : Xanthomonas campestris ATCC 33913
Genome accession: NC_003902
Putative virulence/resistance : Virulence
Product : 3-deoxy-manno-octulosonate cytidylyltransferase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG1212
EC number : 2.7.7.38
Position : 2501661 - 2502470 bp
Length : 810 bp
Strand : -
Note : CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS

DNA sequence :
GTGCAATCAGTTTCTGCAGCGTCTCCCATCGCGTCGGACGACGCGTCCAGCGCCTTCGTGGTGGCCGTCCCGGCGCGCTA
TGCCTCCACCCGGTTGCCCGGCAAGCCGCTGCAGCTGATCGGCGATCGCCCCATGATCCAGCACGTGGCCGAGCGTGCGC
TGGCGGCCGGTGCCCGTGAGGTCTGGGTGGCCACCGACGATGCCCGCATTGCGGAGGCCATCCAGGGCCTGGCCGGCGTG
CGTGTGGCGATGACCAGCAGCGTGCATCTGTCCGGCACCGACCGGCTGGCCGAGTGCGCGCGGATTGCCGGCTGGGATGC
GGCCACCTGTGTGGTGAACCTGCAGGGCGACGAACCGTTCGCACCGGCTGCCGGCATTCGTGCAGTGGCCCAGGTGCTGC
AGCGCTCCGGCGCGGAGATGGCCACGCTCGCCGCGCCGGTGGACAGCGCACACGACCTGTTCGATCCCAATGTGGTGAAG
CTGGTGCGCAACGCCCATGGCGATGCGTTGTACTTCAGCCGTGCGCCGATTCCGTGGCATCGCGACAGTTTTGCCGCCCA
GCGCGATGCTGTACCGGCCGGCAATCACTGGCTGCGGCATATCGGCATCTACGCCTACCGCGCCGGGTTTCTGCAGCAGT
TCGCGGCCATGCCGCCGGGCACGCTGGAGCGCATCGAATCGCTGGAGCAGCTGCGTGTGCTGGAAGCCGGCTACCGCATC
GCGGTGGCGCTGACGCCTGAGCAGTTCCCACCCGGCATCGATACGCCGGAAGACCTGCAGCGCGCGCAAGCGCAACTGGC
GTCTGCATGA

Protein sequence :
MQSVSAASPIASDDASSAFVVAVPARYASTRLPGKPLQLIGDRPMIQHVAERALAAGAREVWVATDDARIAEAIQGLAGV
RVAMTSSVHLSGTDRLAECARIAGWDAATCVVNLQGDEPFAPAAGIRAVAQVLQRSGAEMATLAAPVDSAHDLFDPNVVK
LVRNAHGDALYFSRAPIPWHRDSFAAQRDAVPAGNHWLRHIGIYAYRAGFLQQFAAMPPGTLERIESLEQLRVLEAGYRI
AVALTPEQFPPGIDTPEDLQRAQAQLASA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsU YP_854332.1 3-deoxy-manno-octulosonate cytidylyltransferase Not tested PAI I APEC-O1 Protein 3e-36 44
kpsU CAE85213.1 KpsU protein Virulence PAI V 536 Protein 2e-36 44
kpsU AAZ04469.1 CMP-KDO synthetase Virulence PAI I APEC-O1 Protein 2e-36 44