Gene Information

Name : fliI (XCC1923)
Accession : NP_637288.1
Strain : Xanthomonas campestris ATCC 33913
Genome accession: NC_003902
Putative virulence/resistance : Virulence
Product : flagellar protein
Function : -
COG functional category : N : Cell motility
COG ID : COG1157
EC number : -
Position : 2253490 - 2254866 bp
Length : 1377 bp
Strand : -
Note : -

DNA sequence :
GTGAGCGCCTTGTTGGGAGCCACCCCGGCCGATTGGCTGGATGCACGCAATCTGCGCCTGGCCACCCGTCTGGGCGGGCT
GGGCCTGGACCCGGCCGCCGGCCGCACCCTGATCCGCGAAGGCATCCTGCGCCGCGCGGTGGGCCTGACCCTGGAAGCCA
CCGGCTGCGAAGCGCCGATGGGCGCCACCTGCAAGGTGGAAGTCGATGGCGGCTGGGTCGACGCCGAAGTGGTCGGTTTT
TCCGGCGAACGCACCTATCTGATGCCCAGCGCCGAACTGCACGGCCTGCTGCCCAACGCCCGCGTGGTGCCCTCGCGGCG
CCGCGGCGGCGTGGAAGTGGGCGAAGGCCTGCTCGGCCGCGTCATCGACAGCGACGGCACCCCGCTGGACGGCAAGGGCC
CGATCCGCGCCGAAGGCAGCGTGGGCATGGCCGGCGTGTCGATCAACCCGCTGGCGCGCGAACCCATCACCACCTCGCTG
GACGTGGGCGTGCGCGCCATCAACGCGATGCTGCCCATCGGCCGCGGCCAGCGCGTGGGTCTGTTCGCCGGCTCCGGCGT
CGGTAAATCGACGCTGCTCGGCATGATGACCCGCTTCACCTCCGCCGACGTCATCGTGGTGGGGCTGATCGGCGAACGTG
GCCGCGAAGTGCGCGACTTCGTCGAAACCACCCTGGGCGAGGAAGGCCTGCGCCGCGCCGTGGTCGTGGCCGCCCCGGCC
GACCGCCCGCCGCTGGCCCGCCTGCACGGCGCCTACCGCGCCACCGCGATTGCGGAATGGTTCCGCGATCAGGGCTTGAA
CGTACTGCTGCTGATGGATTCGCTGACCCGTTTTGCGCAGGCCCAGCGCGAGATCGGCCTGTCGGTCGGCGAGCCGCCCA
CCACCCGCGGCTACCCGCCGTCGGTGTTCGCCAAATTGCCGGCGCTGGTGGAACGTGCCGGCAACGGCGCCAAGGGCCGC
GGCTCGATCACCGCCTTCTACACCGTGCTGACCGAAGGCGACGACCCGCAGGACCCGATCGCCGACGCCGCCCGCGCCAT
CCTGGACGGCCACATCCTGCTTTCGCGCCGGGTTGCCGACAGCGGCCTGTACCCGGCCATCGACCTGGAATCCTCGGTCA
GCCGCGTGGTGCAGGACATTGCCAACGACACCTGGCGCCTGCGCATCCGCAAGCTCAAGCGCCTGCTGTCGGCCTACACC
GCCAACCGCGACCTGATCGCCATCGGCGCCTACCAGCGCGGCAGCGACCCGGCCACCGACGAAGCGTTGGCGCGCTGGCC
GGAAATTGTCGACTTCCTTGGCCAGGACGTGCACAAGGCGTCCGATCTGACCGACAGCCTGTCCGCGCTGCAGCGGCTGG
TGGAACCAGAGAACTAA

Protein sequence :
MSALLGATPADWLDARNLRLATRLGGLGLDPAAGRTLIREGILRRAVGLTLEATGCEAPMGATCKVEVDGGWVDAEVVGF
SGERTYLMPSAELHGLLPNARVVPSRRRGGVEVGEGLLGRVIDSDGTPLDGKGPIRAEGSVGMAGVSINPLAREPITTSL
DVGVRAINAMLPIGRGQRVGLFAGSGVGKSTLLGMMTRFTSADVIVVGLIGERGREVRDFVETTLGEEGLRRAVVVAAPA
DRPPLARLHGAYRATAIAEWFRDQGLNVLLLMDSLTRFAQAQREIGLSVGEPPTTRGYPPSVFAKLPALVERAGNGAKGR
GSITAFYTVLTEGDDPQDPIADAARAILDGHILLSRRVADSGLYPAIDLESSVSRVVQDIANDTWRLRIRKLKRLLSAYT
ANRDLIAIGAYQRGSDPATDEALARWPEIVDFLGQDVHKASDLTDSLSALQRLVEPEN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 1e-69 50
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 1e-69 50
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 8e-72 50
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 8e-72 50
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 1e-71 50
lscN AAO18044.1 LscN Virulence TTSS locus Protein 2e-65 50
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 1e-70 49
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-70 49
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 2e-71 49
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-71 49
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 7e-59 49
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 2e-58 49
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 6e-59 49
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 8e-59 49
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 2e-58 49
hrcN AAG33879.1 HrcN Virulence Hrp PAI Protein 4e-55 45
hrcN ABA47275.1 HrcN Virulence S-PAI Protein 2e-60 45
hrcN AAR25633.1 type III secretion cytoplasmic ATPase HrcN Not tested Not named Protein 9e-52 45
hrcN NP_791227.1 type III secretion cytoplasmic ATPase HrcN Virulence Hrp PAI Protein 6e-55 45
hrcN AAT96141.1 HrcN Virulence T-PAI Protein 1e-55 45
hrcN AAT96195.1 HrcN Virulence T-PAI Protein 1e-55 45
hrcN AAT96258.1 HrcN Virulence S-PAI Protein 4e-55 45
hrcN AAT96299.1 HrcN Virulence S-PAI Protein 2e-55 45
hrcN AAB06001.1 HrcN Virulence Hrp PAI Protein 9e-55 45
hrcN AAT96339.1 HrcN Virulence S-PAI Protein 5e-56 44
invC YP_217813.1 ATP synthase SpaL Virulence SPI-1 Protein 1e-48 42
spaI NP_457288.1 secretory apparatus ATP synthase (associated with virulence) Virulence SPI-1 Protein 1e-48 42
spaI NP_806497.1 ATP synthase SpaL Virulence SPI-1 Protein 1e-48 42
invC NP_461815.1 ATP synthase SpaL Virulence SPI-1 Protein 1e-48 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliI NP_637288.1 flagellar protein VFG1254 Protein 1e-98 60
fliI NP_637288.1 flagellar protein VFG2499 Protein 1e-93 58
fliI NP_637288.1 flagellar protein VFG2331 Protein 3e-88 57
fliI NP_637288.1 flagellar protein VFG0192 Protein 9e-66 51
fliI NP_637288.1 flagellar protein VFG0390 Protein 1e-67 50
fliI NP_637288.1 flagellar protein VFG0515 Protein 3e-59 49
fliI NP_637288.1 flagellar protein VFG0048 Protein 2e-67 48
fliI NP_637288.1 flagellar protein VFG2144 Protein 1e-68 46
fliI NP_637288.1 flagellar protein VFG0555 Protein 5e-49 42