Gene Information

Name : hrpB5 (XCC1235)
Accession : NP_636609.1
Strain : Xanthomonas campestris ATCC 33913
Genome accession: NC_003902
Putative virulence/resistance : Virulence
Product : type III secretion system protein HrpB
Function : -
COG functional category : N : Cell motility
COG ID : COG1317
EC number : -
Position : 1440693 - 1441394 bp
Length : 702 bp
Strand : +
Note : -

DNA sequence :
ATGCGTCTTTGGCTGAGGTCCACACCGGAAGCGGTCGGCCTTGACTGCGAGGTCATCCCACGCGAGGCATTGGCCTGTGT
GCTGGAACTGGACGCAGCGGGTGCACAGGTGCACGCGCGTTGCGCGCAGGCGCTGGCGGACGCCCAGACGCGTGCGCAGG
CGCTGCTCGACGCTGCCCAACGGCAGGCCGAGGCCATCCTTCAGGATGCCCACGACAGGGCCGAGCGCAGTGCACGCCTG
GGCTATGCCGCCGGGCTGCGCCGTCAGCTCGACGCGTGGAACGAGCGCGGCGTGCGGCATGCCTTCGCGGCCCAGGACGC
CGCACGGCGCGCCCGCGAGCGCCTGGCCGAGATCGTCGCGCACGCCTGCGAGCAGGTTCTGCACGGGCACGATCCTGCGG
CGCTGTACGCGCGCGCCGCACAGGCGCTGGACGGCGCCCTGGACGAGGCGAACGCCCTGCAGGTGAGCGTGCATCCCGAT
GCGCTGGACGATGCACGGCGCGCCTTCGATGCGGCCGCAGCGGCCGGCGGATGGAGCATGCCGGTGGAACTGTGCGGTGA
TACGACTCTGGCCTTGGGTGCCTGCGTGTGCGAATGGGATACCGGCGTGTTCGAGACCGATCTGCGTGATCAGCTGCGCA
GTCTCCGGCGCGTCATTCGCCGCGTGTTGGCCACGCCGCAGGCGGTGCCGGATGCTTGCTGA

Protein sequence :
MRLWLRSTPEAVGLDCEVIPREALACVLELDAAGAQVHARCAQALADAQTRAQALLDAAQRQAEAILQDAHDRAERSARL
GYAAGLRRQLDAWNERGVRHAFAAQDAARRARERLAEIVAHACEQVLHGHDPAALYARAAQALDGALDEANALQVSVHPD
ALDDARRAFDAAAAAGGWSMPVELCGDTTLALGACVCEWDTGVFETDLRDQLRSLRRVIRRVLATPQAVPDAC

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrpB5 NP_636609.1 type III secretion system protein HrpB Virulence Hrp PAI Protein 7e-51 100
XC_3007 YP_244075.1 type III secretion system protein HrpB Virulence Hrp PAI Protein 8e-51 99
hrpB5 AAB08460.1 HrpB5 Virulence Hrp PAI Protein 1e-40 79
hrcL YP_362162.1 type III secretion system protein HrpB Virulence Hrp PAI Protein 2e-40 79
hrpB5 NP_640766.1 type III secretion system protein HrpB Virulence Hrp PAI Protein 2e-42 78
hrpB5 AAP34340.1 HrpB5 Virulence Hrp PAI Protein 1e-42 78
hrpB5 YP_198729.1 type III secretion system protein HrpB Virulence Hrp PAI Protein 5e-41 77
hrpB5 BAB07853.1 HrpB5 Virulence Hrp PAI Protein 3e-41 77
hrpB5 AAF61282.1 HrpB5 Virulence Hrp PAI Protein 3e-41 77