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Name : SCM2.19c (SCO0866) Accession : NP_625166.1 Strain : Streptomyces coelicolor A3(2) Genome accession: NC_003888 Putative virulence/resistance : Unknown Product : ECF family RNA polymerase sigma factor Function : - COG functional category : K : Transcription COG ID : COG1595 EC number : - Position : 912931 - 913572 bp Length : 642 bp Strand : - Note : SCM2.19c, probable ECF-family sigma factor, len: 213 aa. Highly similar to many sigma factors including: Streptomyces coelicolor TR:O86856 (EMBL:AJ007313) sigma factor SigT (236 aa), fasta scores opt: 292 z-score: 354.1 E(): 2.4e-12 35.7% identity in 185 DNA sequence : GTGATCAGTCCAGCCCTGTCCGCCGCATGCGGCAAGACCCATCGACCCGCGGGAACGCCCGAGGAGCGGACACCCGCCGA CGAGTTGGTCACGGCCTGGGCGCTCACTGCCCGCGGTGGCGATCCGGAAGCCGTCGAGAGGTTCGTCGGCGCCCTGCACC GAGACGTCCGGCGCTTCGTTGCGTACCTCAGTGCCGACCCGCAGGCCGCCGACGACCTCGCACAGGACACCTTCCTGCGG GCCTTGGGCAGCCTGCACCGTTTCGAGGGCCGCTCCTCCGCCCGGGTCTGGCTGCTGTCCATCGCCCGCCGAGCGGTGAT CGACAACTACCGCTACGCGTCGGCCCGGCCGCGTCTCGCCGACGTCGACGACTGGCAGGATGCCGCCGAACGCGCTCAGG AGCGCGGTCTGCCGGGCTTCGAAGACGGCATCGCCCTCGCCGATCTGCTGTCCGCCCTGCCCGCCGAACGCCGCGAGGCA TTCGTCCTCACCCAACTCGTCGGTCTCCCTTACGCGGAGGCGGCCGAGCTGAGTGGTTGCCCGGTCGGGACGGTCCGGTC GAGGGTCGCCCGGGCCCGTGCCGCACTGGTGGACCTGCTGGAGGACGCGGAACGGCCCGCCGCTCAGAGGGCTTCGGCCT GA Protein sequence : MISPALSAACGKTHRPAGTPEERTPADELVTAWALTARGGDPEAVERFVGALHRDVRRFVAYLSADPQAADDLAQDTFLR ALGSLHRFEGRSSARVWLLSIARRAVIDNYRYASARPRLADVDDWQDAAERAQERGLPGFEDGIALADLLSALPAERREA FVLTQLVGLPYAEAAELSGCPVGTVRSRVARARAALVDLLEDAERPAAQRASA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| sigC | YP_005126716.1 | ECF-family sigma factor C | Not tested | Not named | Protein | 1e-17 | 41 |
