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Name : SCM2.17c (SCO0864) Accession : NP_625164.1 Strain : Streptomyces coelicolor A3(2) Genome accession: NC_003888 Putative virulence/resistance : Unknown Product : ECF family RNA polymerase sigma factor Function : - COG functional category : K : Transcription COG ID : COG1595 EC number : - Position : 911343 - 911939 bp Length : 597 bp Strand : - Note : SCM2.17c, probable ECF-family sigma factor, len: 198 aa. Highly similar to many sigma factors including: Streptomyces coelicolor TR:O86856 (EMBL:AJ007313) sigma factor SigT (236 aa), fasta scores opt: 268 z-score: 337.2 E(): 2.1e-11 34.3% identity in 181 DNA sequence : ATGACCCCTGCCCTGCCCACCGCGACCGATGACACGGTCACCGCCTGGGCGCTCGCCGCCGCCGCGGGCGACAGCGAGGC GGTCGACCGCTTCGTCCGGGAGCTGCAACGCGATGTGCGCCGCTACGTGGCGTACCTCGCCGACGACGTGCAGGCGGCGG ACGATCTGACCCAGGACACGTTCCTGCGCGCCCTCACGGCACTGCCCCGGTTCGAGGGGCGTTCCTCGGCGCGCGTGTGG CTGCTGTCCATCGCCCGCCGGGCCGTCGTCGACAGTCTGCGCCGCGCCGCGTGCCGGCCCCGGACCGCGTGCACCGACGA CTGGCAGGCCGCTGCCGAACGCGCCCAGCCGACGGGGCTTCCCGGCTTCGACGAGGGCATCGCGCTGTGGGAGCTGGTCG ACTCGCTGCCCGGTGAGCGCCGTGAGGCATTCGTCCTGACCCAGCTCCTGGGGCTGCCGTACGCGGAGGCCGCCGAAATG AGCCGGTGCCCGGTCGGCACGGTGCGTTCCCGGGTGTCCCGCGCCCGGACGGCCCTGGCCGAGTGGGCCGCGGACGAGTC CGTCCCCCGCCACCCGGTGGAGCGGGCCGCGGCCTGA Protein sequence : MTPALPTATDDTVTAWALAAAAGDSEAVDRFVRELQRDVRRYVAYLADDVQAADDLTQDTFLRALTALPRFEGRSSARVW LLSIARRAVVDSLRRAACRPRTACTDDWQAAAERAQPTGLPGFDEGIALWELVDSLPGERREAFVLTQLLGLPYAEAAEM SRCPVGTVRSRVSRARTALAEWAADESVPRHPVERAAA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| sigC | YP_005126716.1 | ECF-family sigma factor C | Not tested | Not named | Protein | 2e-20 | 48 |
