Gene Information

Name : SC3C8.13 (SCO6394)
Accession : NP_630485.1
Strain : Streptomyces coelicolor A3(2)
Genome accession: NC_003888
Putative virulence/resistance : Unknown
Product : IS element ATP binding protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG1484
EC number : -
Position : 7061835 - 7062605 bp
Length : 771 bp
Strand : +
Note : SC3C8.13, probable IS element ATP binding protein (IS21/IS1162 family), len: 256 aa; similar to e.g. ISTB_BACST insertion sequence IS5376 ATP-binding protein (251 aa), fasta scores; opt: 741 z-score: 1114.9 E(): 0, 44.4% identity in 248 aa overlap. Contai

DNA sequence : 
TTGAGCGAGCTGACCAGCAACCGCATCCGCACCACCGCCGCCAAGCTCGGCCTGCCGCACCTGGCCGAGGCCCTCAACCA
ATACGTCCAGCGGGCGGACGAGGCCAAGATGGGCTACCTCGACTTCCTCGACTTGGTGCTGGCTGAGGAACTCGCCGTCC
GTGACGACCGGCGCTTCCGCAACGGCCTGCGGCTGTCGAAGCTGCCGCACCACAAGACACTGGAGGACTACGACTTCTCC
TTCCAGCCCGACCTCGATCCGCGCAAGGTCAAGGACCTGGCCACCCTCTCCTTCATCGAGGACAAGGCCAATGTCGCTCT
GCTCGGGCCGCCCGGGGTCGGCAAGACGCACATCGCCGTCGCCCTCGCGGTCGCGGCCTGCCGGGCCGGGTACTCGATCT
ACTTCACCAGCCTCGACGACATGGTCCGCCACCTCAAAGCCGCCGAGGACCAGGGCCGGCTGATCAGCAAGCTCACCAGC
TACCTTCGCCCCGCCGTTCTCGTCGTCGACGAGGTGGGCTACCAACCGCTTGAGCGGGCCGAGGCGAACCTGGTCTTTCA
GGTCATCTCCAAGCGTTACGAGAAGGGCTCCATCATCCTGACCTCGAACAAGACCTTCGGTGAGTGGGGCCAGGTCTTTG
GCGACGAGGTCCTGGCCACCGCGATCCTCGACCGCCTCCTGCACCACTGCGAAGTCGTCTCGATCAACGGCAACAGTTAC
CGGCTCAAGAACCGCCTCCAGGCCATCGAACGAGACACCGACGTGGCCTGA

Protein sequence : 
MSELTSNRIRTTAAKLGLPHLAEALNQYVQRADEAKMGYLDFLDLVLAEELAVRDDRRFRNGLRLSKLPHHKTLEDYDFS
FQPDLDPRKVKDLATLSFIEDKANVALLGPPGVGKTHIAVALAVAACRAGYSIYFTSLDDMVRHLKAAEDQGRLISKLTS
YLRPAVLVVDEVGYQPLERAEANLVFQVISKRYEKGSIILTSNKTFGEWGQVFGDEVLATAILDRLLHHCEVVSINGNSY
RLKNRLQAIERDTDVA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
s0036 CAD33774.1 ORF B protein Not tested PAI I 536 Protein 3e-45 44
y1093 CAD42087.1 OrfB protein of IS100 transposase Not tested PAI II 536 Protein 3e-45 44
orfB CAE85183.1 OrfB protein, transposase, IS100 Not tested PAI V 536 Protein 3e-45 44
YPTB1586 YP_070114.1 transposase/IS protein Not tested HPI Protein 4e-45 44
api84 CAF28558.1 putative transposase Not tested YAPI Protein 3e-45 44
unnamed CAA21402.1 - Not tested HPI Protein 4e-45 44
y1093 CAC43411.1 IS100 transposase; transposase ORFA Not tested PAI III 536 Protein 3e-45 44
y1093 CAD66188.1 transposase Orf B, insertion element IS100 Not tested PAI III 536 Protein 2e-45 44
unnamed CAB46598.1 IS100 transposase Not tested HPI Protein 3e-45 44
YPO1901 YP_002346891.1 transposase/IS protein Not tested HPI Protein 4e-45 44
y2410 NP_669717.1 transposase/IS protein Not tested HPI Protein 4e-45 44
aec58 AAW51741.1 Aec58 Not tested AGI-3 Protein 5e-45 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SC3C8.13 NP_630485.1 IS element ATP binding protein VFG1606 Protein 2e-45 44
SC3C8.13 NP_630485.1 IS element ATP binding protein VFG1515 Protein 2e-45 44
SC3C8.13 NP_630485.1 IS element ATP binding protein VFG1663 Protein 1e-45 44
SC3C8.13 NP_630485.1 IS element ATP binding protein VFG1627 Protein 2e-45 44