Gene Information

Name : SC3C8.10 (SCO6391)
Accession : NP_630482.1
Strain : Streptomyces coelicolor A3(2)
Genome accession: NC_003888
Putative virulence/resistance : Unknown
Product : IS110 transposase/integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3547
EC number : -
Position : 7057809 - 7059026 bp
Length : 1218 bp
Strand : +
Note : SC3C8.10, probable IS110 transposase/integrase, len: 405 aa; identical to YIS1_STRCO insertion element IS110 hypothetical protein (405 aa). Similar to many e.g. YI11_STRCL S.clavuligerus IS116 encoded integrase/transposase (399 aa), fasta scores; opt: 680

DNA sequence : 
ATGTTCGACACCGAAGACGTGGGCGTGTTCCTCGGCCTGGACGTCGGCAAGACCGCTCACCACGGCCACGGACTCACCCC
GGCCGGGAAGAAGGTCCTCGACAAGCAGCTGCCCAACAGCGAGCCGAGACTGCGGGCCGTCTTCGACAAGCTGGCCGCGA
AGTTCGGCACGGTCCTGGTGATCGTGGACCAGCCCGCTTCCATCGGCGCCCTCCCGCTCACGGTCGCCCGGGACGCCGGC
TGCAAGGTCGCCTACCTGCCCGGCCTGGCGATGCGGCGGATCGCCGACCTGTATCCCGGCGAGGCCAAGACCGACGCGAA
GGACGCAGCGGTCATCGCGGACGCGGCCCGCACGATGGCGCACACCCTGCGTTCCCTGGAGCTCACCGACGAGATCACCG
CCGAGCTCTCGGTCCTCGTCGGCTTCGACCAGGACCTCGCGGCCGAGGCCACCCGCACCTCCAACCGGATACGCGGCCTG
CTCACCCAGTTCCACCCCTCGCTGGAGCGCGTCCTGGGCCCCCGCCTCGACCACCAGGCCGTCACTTGGCTGCTGGAGCG
CTACGGCTCTCCGGCCGCACTGCGCAAAGCCGGACGCCGCAGGCTCGTCGAGCTCGTCCGGCCCAAGGCCCCGCGCATGG
CCCAGCGGCTGATCGACGACATCTTCGACGCCCTGGACGAGCAGACCGTCGTGGTCCCGGGAACCGGCACCCTCGACATC
GTCGTGCCCTCCCTGGCCAGCTCTCTCACCGCTGTCCACGAACAGCGCCGGGCCCTGGAAGCCCAGATCAACGCCCTGCT
GGAGGCCCACCCTCTTTCCCCGGTCCTGACGTCGATGCCCGGCGTCGGCGTCAGGACCGCCGCCGTCCTGCTGGTCACCG
TCGGCGACGGCACCAGCTTCCCCACCGCCGCCCACCTGGCCTCCTACGCCGGACTCGCCCCGACCACGAAGTCGTCCGGT
ACCTCGATCCACGGCGAACACGCGCCCCGAGGCGGCAACCGCCAGCTCAAACGCGCCATGTTCCTGTCCGCCTTCGCCTG
CATGAACGCCGACCCCGCCTCCCGCACCTACTACGACCGCCAGCGAGCCCGCGGCAAAACCCACACCCAGGCCCTCCTCC
GCCTCGCCCGCCAACGCATCAGCGTCCTGTTCGCCATGCTCCGAGACGGCACCTTCTACGAATCCCGCATGCCCGCGGGC
GTCGAGCTCGCGGCATGA

Protein sequence : 
MFDTEDVGVFLGLDVGKTAHHGHGLTPAGKKVLDKQLPNSEPRLRAVFDKLAAKFGTVLVIVDQPASIGALPLTVARDAG
CKVAYLPGLAMRRIADLYPGEAKTDAKDAAVIADAARTMAHTLRSLELTDEITAELSVLVGFDQDLAAEATRTSNRIRGL
LTQFHPSLERVLGPRLDHQAVTWLLERYGSPAALRKAGRRRLVELVRPKAPRMAQRLIDDIFDALDEQTVVVPGTGTLDI
VVPSLASSLTAVHEQRRALEAQINALLEAHPLSPVLTSMPGVGVRTAAVLLVTVGDGTSFPTAAHLASYAGLAPTTKSSG
TSIHGEHAPRGGNRQLKRAMFLSAFACMNADPASRTYYDRQRARGKTHTQALLRLARQRISVLFAMLRDGTFYESRMPAG
VELAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
s0055 CAD33753.1 putative IS110 transposase Not tested PAI I 536 Protein 5e-92 59

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SC3C8.10 NP_630482.1 IS110 transposase/integrase VFG1494 Protein 3e-92 59