Gene Information

Name : pyk2; SC8F4.27c (SCO5423)
Accession : NP_629562.1
Strain : Streptomyces coelicolor A3(2)
Genome accession: NC_003888
Putative virulence/resistance : Virulence
Product : pyruvate kinase
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG0469
EC number : -
Position : 5892975 - 5894405 bp
Length : 1431 bp
Strand : -
Note : SC8F4.27c, pyk2, pyruvate kinase, len: 476 aa; strongly similar to many e.g. SW:Q46078 (KPYK_CORGL) pyruvate kinase from Corynebacterium glutamicum (Brevibacterium flavum) (475 aa) fasta scores; opt: 1693, z-score: 1907.7, E(): 0, 55.3% identity in 474 aa

DNA sequence :
ATGCGCCGTTCGAAAATCGTCTGTACTCTCGGCCCCGCGGTCGACTCCCACGAGCAGCTCGTCACGCTGATCGAAGCCGG
CATGAACGTGGCCCGCTTCAACTTCAGCCATGGCACCCACGCCGAGCACCAGGGTCGTTACGACCGGGTCCGGGCCGCCG
CCAAGGAGACCGGCCGGGCCATCGGCGTCCTCGCCGACCTCCAGGGCCCGAAGATCCGCCTGGAGACCTTCGCGGAGGGC
CCCGTCGAGCTGGTGCGCGGTGACGAGTTCACCATCACCGCCGAGGACGTCCCGGGCGACAGGACGATCTGCGGCACGAC
CTACAAGGGCCTGCCCGGTGACGTCACCAAGGGCGACCAGGTGCTCATCAACGACGGCAACGTCGAGCTGAAGGTCACCG
AGGTCGAGGGCCCCCGGGTGAAGACGATCGTCATCGAGGGCGGCGTCATCTCCGACCACAAGGGCATCAACCTGCCGGGC
GCGGCGGTCAACGTCCCCGCGCTGAGCGAGAAGGACGTCGAGGACCTCCGGTTCGCGCTGCGCATGGGCTGCGACCTGGT
CGCCCTCTCCTTCGTCCGGGACGCCAAGGACGTCGCCGACGTGCACCGCGTCATGGACGAGGAGGGCCGCCGGGTCCCGG
TGATCGCCAAGGTCGAGAAGCCCCAGGCGGTCGACAACATGGAGGACGTCGTGATGGCGTTCGACGGCGTGATGGTCGCC
CGTGGCGACCTGGCCGTCGAGTACCCGCTCGAGAAGGTCCCCATGGTGCAGAAGCGCCTGATCGAGCTGTGCCGGCGCAA
CGCCAAGCCGGTGATCGTGGCGACCCAGATGATGGAGTCGATGATCACGAACTCCCGGCCGACCCGCGCCGAGGCCTCCG
ACGTGGCCAACGCGATCCTGGACGGCGCCGACGCGGTCATGCTGTCCGCCGAGTCGAGCGTGGGCGCCTACCCGATCGAG
ACCGTCAAGACGATGTCGAAGATCGTCACCGCCGCCGAGCAGGAGCTGCTCTCCAAGGGCCTCCAGCCGCTGGTGCCGGG
CAAGAAGCCGCGCACGCAGGGCGGTTCGGTGGCCCGTGCGGCCGCCGAGATCGCCGACTTCCTGGGCGGCAAGGGCCTGG
TCGCCTTCACCCAGTCCGGCGACACCGCCCGCCGGCTCTCCCGCTATCGCGCGGCCCAGCCGATCCTCGCCTTCACCACC
GACGAGTCCACCCGCAACCAGCTGGCGCTCAGCTGGGGAGTGGAGCCGCACGTGGTGCCGTTCGTGAACACCACGGACGA
GATGGTGGACCTGGTGGACCAGGAGACGGCCCGCCTCGGCCGGTTCAGCGACGGCGACACCGTCGTGATCACCGCCGGTT
CGCCCCCCGGCGTGTCCGGCACCACCAACATGGTGCGGGTCCTCCACCTGGGCGAGACACGGCGCGGCTGA

Protein sequence :
MRRSKIVCTLGPAVDSHEQLVTLIEAGMNVARFNFSHGTHAEHQGRYDRVRAAAKETGRAIGVLADLQGPKIRLETFAEG
PVELVRGDEFTITAEDVPGDRTICGTTYKGLPGDVTKGDQVLINDGNVELKVTEVEGPRVKTIVIEGGVISDHKGINLPG
AAVNVPALSEKDVEDLRFALRMGCDLVALSFVRDAKDVADVHRVMDEEGRRVPVIAKVEKPQAVDNMEDVVMAFDGVMVA
RGDLAVEYPLEKVPMVQKRLIELCRRNAKPVIVATQMMESMITNSRPTRAEASDVANAILDGADAVMLSAESSVGAYPIE
TVKTMSKIVTAAEQELLSKGLQPLVPGKKPRTQGGSVARAAAEIADFLGGKGLVAFTQSGDTARRLSRYRAAQPILAFTT
DESTRNQLALSWGVEPHVVPFVNTTDEMVDLVDQETARLGRFSDGDTVVITAGSPPGVSGTTNMVRVLHLGETRRG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY1744 NP_456147.1 pyruvate kinase Not tested SPI-2 Protein 2e-80 43
pykF YP_216386.1 pyruvate kinase Not tested SPI-2 Protein 1e-80 43
pykF NP_805051.1 pyruvate kinase Not tested SPI-2 Protein 1e-80 43
pykF CAA68205.1 pyruvate kinase like protein Not tested SPI-2 Protein 4e-80 43
pykA NP_273151.1 pyruvate kinase Not tested IHT-A Protein 4e-68 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pyk2; SC8F4.27c NP_629562.1 pyruvate kinase VFG0479 Protein 5e-81 43