Gene Information

Name : SCF34.14c (SCO0495)
Accession : NP_624812.1
Strain : Streptomyces coelicolor A3(2)
Genome accession: NC_003888
Putative virulence/resistance : Virulence
Product : iron-siderophore ABC-transporter ATP-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 527889 - 528752 bp
Length : 864 bp
Strand : -
Note : SCF34.14c, probable iron-siderophore ABC-transporter ATP-binding protein, len: 287 aa; similar to SW:FEPC_ECOLI (EMBL:X57471), FepC, Escherichia coli ferric enterobactin transport ATP-binding protein (271 aa), fasta scores; opt: 946 z-score: 1003.1 E(): 0

DNA sequence : 
GTGGTCGTTCAGTCCATCACCGGGACCGAGACGGAAGTTGACGGCGCCTCACGGCTGGCGGCCCGGGGCGTCACCGTCGG
GTACGGGACCCGGTCCGTCATCGACGGCCTCGACGTGGCGATCCCGCCCGGGGTGATCACCACCATCATCGGACCGAACG
GCTGCGGCAAGTCGACCCTGCTGCGCACCCTGTCCCGGCTGCTCAGGCCGACCGGCGGAACGGTCGTGCTGGACGGCGAG
GACATCGCCGCGCTCCGGACCCGCGACGTGGCGAAGAAGCTCGGCCTGCTGCCCCAGGCACCGGTGGCCCCGGAGGGGCT
GACGGTGTCCGACCTGGTCGCCCGCGGCCGCCACCCGCACCAGAGCTGGCTGCGGCAGTGGTCCTCGGACGACGCCGACG
TCGTACGGCAGGCGCTGGCCATGACCGGCGTGTCCGACCTCGCGGACCGGCCCGTCGACTCGCTGTCCGGTGGCCAGCGC
CAGCGGGTGTGGATCTCGATGACCCTCGCCCAGGGCACCGACCTGCTGCTGCTGGACGAGCCGACCACCTATCTGGATCT
CGCGCACGCGGTCGACGTGCTCGACCTCGTCGACGACCTGCACGAGTCCGGGCGCACCGTGGTCATGGTGCTGCACGACC
TCAACCTGGCCGCGCGCTACAGCGACAACCTCGTCGTCATGCGGGAGGGCGCGATCCTGGCGCAGGGGCACCCGCGCGAC
GTCATCACCGCCGGCCTGCTGCACGAGGCGTTCGGGCTGCGCGCCAAGGTGATCGACGACCCGGTCGGGGACCGCCCGCT
CATCGTGCCGATCGGGCGCACCCATGTCGAACTCGACCGATCCGCGCCCGAGTTGTTGAAGTGA

Protein sequence : 
MVVQSITGTETEVDGASRLAARGVTVGYGTRSVIDGLDVAIPPGVITTIIGPNGCGKSTLLRTLSRLLRPTGGTVVLDGE
DIAALRTRDVAKKLGLLPQAPVAPEGLTVSDLVARGRHPHQSWLRQWSSDDADVVRQALAMTGVSDLADRPVDSLSGGQR
QRVWISMTLAQGTDLLLLDEPTTYLDLAHAVDVLDLVDDLHESGRTVVMVLHDLNLAARYSDNLVVMREGAILAQGHPRD
VITAGLLHEAFGLRAKVIDDPVGDRPLIVPIGRTHVELDRSAPELLK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-56 57
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 2e-41 49
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 6e-49 46
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 6e-49 46
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-39 46
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 5e-40 45
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 5e-40 45
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 5e-40 45
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 5e-40 45
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-45 45
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 2e-45 45
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 1e-45 45
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 1e-45 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SCF34.14c NP_624812.1 iron-siderophore ABC-transporter ATP-binding protein BAC0164 Protein 1e-41 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SCF34.14c NP_624812.1 iron-siderophore ABC-transporter ATP-binding protein VFG0925 Protein 1e-49 51
SCF34.14c NP_624812.1 iron-siderophore ABC-transporter ATP-binding protein VFG1042 Protein 1e-41 49