Gene Information

Name : SCD40A.12c (SCO4666)
Accession : NP_628826.1
Strain : Streptomyces coelicolor A3(2)
Genome accession: NC_003888
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 5096270 - 5097010 bp
Length : 741 bp
Strand : -
Note : SCD840A.12c, possible ABC-transporter ATP-binding protein, len: 246 aa; similar to TR:Q9XAA7 (EMBL:AL096837) Streptomyces coelicolor ABC-transporter ATP-binding protein SCF43A.08, 264 aa; fasta scores: opt: 984 z-score: 1127.0 E(): 0; 64.0% identity in 23

DNA sequence : 
ATGACCAGCGACGACGCGATCCGACTGAGTTCCGTCAGCAGACGGTACGGCGCGGGCGAGGGCACCGTGACCGCCCTCGA
TGACGTGTCCCTCGCCCTGCGCCGCGGCAGCTTCACCGCCGTCATGGGCCCCTCGGGTTCGGGCAAGTCGACCCTGCTCC
AGTGCGCCGCCGGACTGGACCGGCCCACGTCGGGATCGGTCGTCGTCGGCGGCACGGAGCTGACGGGGCTGAGCCAGCGG
CGGCTGACCCTGCTGCGCCGGGAGCGCGTCGGCTTCGTCTTCCAGGCGTTCAACCTGCTGCCGTCGCTGACCGCCGCGCA
GAACGTGGCGCTCCCCCTGCGGCTGGCCGGACGCCGCCCGCCGCGGGGCCGGGTGCGCGAGGCGCTGCGCCAGGTCGGGC
TGGCCGACCGCGCCCGGCACCGGCCGGCCGAGCTCTCCGGCGGCCAGCAGCAACGCGTCGCCCTGGCCCGCGCGCTGATC
ACCCGCCCGCAGGTGCTGTTCGCCGACGAGCCGACGGGGGCGCTGGACTCGCGCACCGGCCGGGAGGTGCTGACCCTGCT
GCGCGCCATGGCCGACGGCGAGGGCCGCACGGTCGTCATGGTCACCCACGATCCGGTGGCCGCCTCCTACGCCGACCGCG
TGCTGTTCCTCGTCGACGGCCGGGTCCACGACGAACTGACCGGCTCCGGACCGGACGGCATCGCCACCCGCATGACCCGC
CTGGAGGCCGCGCCGTGCTGA

Protein sequence : 
MTSDDAIRLSSVSRRYGAGEGTVTALDDVSLALRRGSFTAVMGPSGSGKSTLLQCAAGLDRPTSGSVVVGGTELTGLSQR
RLTLLRRERVGFVFQAFNLLPSLTAAQNVALPLRLAGRRPPRGRVREALRQVGLADRARHRPAELSGGQQQRVALARALI
TRPQVLFADEPTGALDSRTGREVLTLLRAMADGEGRTVVMVTHDPVAASYADRVLFLVDGRVHDELTGSGPDGIATRMTR
LEAAPC

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-33 49
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-34 48
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-34 48
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-34 48
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 1e-23 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SCD40A.12c NP_628826.1 ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 1e-35 50
SCD40A.12c NP_628826.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 6e-39 47
SCD40A.12c NP_628826.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 1e-40 46
SCD40A.12c NP_628826.1 ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 6e-38 44