Gene Information

Name : SCD8A.03 (SCO4230)
Accession : NP_628404.1
Strain : Streptomyces coelicolor A3(2)
Genome accession: NC_003888
Putative virulence/resistance : Virulence
Product : response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4634485 - 4635156 bp
Length : 672 bp
Strand : +
Note : SCD8A.03, probable response regulator, len: 223 aa; similar to TR:O86269 (EMBL:AJ001103) Lactococcus lactis ArcA protein, 233 aa; fasta scores: opt: 700 z-score: 810.0 E(): 0; 49.3% identity in 223 aa overlap and to TR:Q56180 (EMBL:U38917) Synechococcus s

DNA sequence : 
GTGCTCGTCGTCGAGGACGAGGAGTCCTTCTCCGACGCCCTGTCGTACATGCTCCGCAAGGAGGGCTTCGAGGTCGCCAT
CGCGACCACCGGCCCCGACGGACTCGACGAGTTCGAGCGCAACGGCGCCGACCTCGTGCTCCTCGACCTGATGCTGCCCG
GCCTGCCGGGCACCGAGGTCTGCCGCCAGCTGCGCGGCCGCTCGAACGTTCCCGTGATCATGGTGACCGCCAAGGACAGC
GAGATCGACAAGGTCGTCGGGCTGGAGATAGGGGCCGACGACTACGTCACCAAGCCCTTCTCCTCCCGCGAGCTGGTCGC
CCGCATCCGAGCCGTACTGCGGCGGCGCGGCGAGCCGGAGGAGGTCGCCCCGGCCGCCCTGGAGGCCGGGCCCGTCCGGA
TGGACGTGGACCGGCACGTGGTGACCGTGGGCGGCACCAAGGTCGACCTGCCGCTGAAGGAGTTCGACCTGCTGGAGATG
CTGCTGCGCAACGCGGGCCGCGTGCTGACCCGCATGCAGCTGATCGACCGGGTCTGGGGCGCCGACTACGTCGGTGACAC
CAAGACCCTCGACGTCCACGTCAAGCGGCTGCGCGCCAAGATCGAGCCCGACCCGGGCGCGCCGCGGTACCTGGTGACGG
TGCGCGGGCTGGGTTACAAGTTCGAGCCGTAG

Protein sequence : 
MLVVEDEESFSDALSYMLRKEGFEVAIATTGPDGLDEFERNGADLVLLDLMLPGLPGTEVCRQLRGRSNVPVIMVTAKDS
EIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEPEEVAPAALEAGPVRMDVDRHVVTVGGTKVDLPLKEFDLLEM
LLRNAGRVLTRMQLIDRVWGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFEP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 4e-17 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SCD8A.03 NP_628404.1 response regulator AE000516.2.gene3505. Protein 6e-30 47
SCD8A.03 NP_628404.1 response regulator HE999704.1.gene2815. Protein 2e-28 46
SCD8A.03 NP_628404.1 response regulator NC_012469.1.7685629. Protein 4e-32 45
SCD8A.03 NP_628404.1 response regulator NC_012469.1.7686381. Protein 4e-30 44
SCD8A.03 NP_628404.1 response regulator NC_002952.2859905.p0 Protein 3e-29 43
SCD8A.03 NP_628404.1 response regulator NC_007622.3794472.p0 Protein 3e-29 43
SCD8A.03 NP_628404.1 response regulator NC_002758.1121668.p0 Protein 3e-29 43
SCD8A.03 NP_628404.1 response regulator NC_009641.5332272.p0 Protein 3e-29 43
SCD8A.03 NP_628404.1 response regulator NC_013450.8614421.p0 Protein 3e-29 43
SCD8A.03 NP_628404.1 response regulator NC_007793.3914279.p0 Protein 3e-29 43
SCD8A.03 NP_628404.1 response regulator NC_003923.1003749.p0 Protein 3e-29 43
SCD8A.03 NP_628404.1 response regulator NC_002745.1124361.p0 Protein 3e-29 43
SCD8A.03 NP_628404.1 response regulator NC_009782.5559369.p0 Protein 3e-29 43
SCD8A.03 NP_628404.1 response regulator NC_002951.3237708.p0 Protein 3e-29 43
SCD8A.03 NP_628404.1 response regulator AE016830.1.gene1681. Protein 2e-30 42
SCD8A.03 NP_628404.1 response regulator AE015929.1.gene1106. Protein 5e-16 41
SCD8A.03 NP_628404.1 response regulator BAC0125 Protein 6e-21 41
SCD8A.03 NP_628404.1 response regulator BAC0308 Protein 2e-18 41
SCD8A.03 NP_628404.1 response regulator HE999704.1.gene1528. Protein 4e-22 41
SCD8A.03 NP_628404.1 response regulator BAC0638 Protein 2e-11 41
SCD8A.03 NP_628404.1 response regulator BAC0197 Protein 3e-16 41
SCD8A.03 NP_628404.1 response regulator CP000034.1.gene3671. Protein 5e-22 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SCD8A.03 NP_628404.1 response regulator VFG1389 Protein 2e-19 44
SCD8A.03 NP_628404.1 response regulator VFG1390 Protein 1e-24 42
SCD8A.03 NP_628404.1 response regulator VFG0596 Protein 2e-17 41