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Name : clpB; SCH10.39c; SCH44.01c (SCO3661) Accession : NP_733613.1 Strain : Streptomyces coelicolor A3(2) Genome accession: NC_003888 Putative virulence/resistance : Virulence Product : ATP-dependent protease ATP-binding subunit Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 4040450 - 4043047 bp Length : 2598 bp Strand : - Note : clpB, SCH10.39c, probable clp-family ATP-binding subunit, partial CDS, len: >853 aa; similar to many e.g. SW:CLPB_ECOLI (EMBL:M29364) Escherichia coli ATP-dependent protease regulatory subunit (857 aa), fasta scores; opt: 3039 z-score: 2963.3 E(): 0, 56.5 DNA sequence : GTGGACGCCGAGCTGACCAACCGGAGCCGGGACGCGATCAACGCGGCCAGCAACCGGGCCGTGACCGAGGGAAACGCCGA CCTCACCCCCGCCCACCTGCTCCTCGCCCTGCTCCAGGGGCAGGACAACGAGAACATCACCGACCTGCTCGCCGCCGTCG AGGCCGACCTCGCCGCCGTGCGCACCGGCGCCGAGCGCATCGTCGCCGGGCTGCCCAGCGTGACCGGGTCCACCGTCGCA CCCCCGCAACCCAGCCGTGAGATGCTCGCCGTGGTCGCCGACGCCCAGGCACGCGCCAAGGAACTCGGGGACGAGTACCT CTCCACCGAGCACCTGCTCCTCGGCATCGCCGCGAAGGGCGGCGCGGCCGGAGAGGTACTGGAGGGGCAGGGAGCCAGTG CGAAGAAGCTGCAGGAGGCCTTCCGCAAGGCCAGGGGAGGGCGTCGCGTGACCACCGCCGACCCCGAGGGCCAGTACAAG GCCCTGGAGAAGTTCGGTACCGACCTCACCGCCGCAGCCCGGGACGGGAAGCTCGACCCCGTCATCGGACGGGACCAGGA GATCCGGCGGGTGGTCCAGGTGCTCAGCCGGCGGACCAAGAACAACCCCGTCCTCATCGGCGAGCCCGGCGTCGGCAAGA CCGCCGTCGTCGAAGGGCTCGCCCAGCGGATCGTCAAGGGGGACGTGCCCGAGTCGCTGAAGGACAAGCGGCTGGTCGCG CTGGACCTCGGCGCCATGGTCGCCGGGGCCAAGTACCGCGGTGAGTTCGAGGAGCGGCTGAAGACCGTGCTCGCCGAGAT CAAGGACTCCGACGGGCAGGTCGTCACCTTCATCGACGAGCTGCACACCGTCGTGGGCGCCGGCGCCGGCGGGGACTCCG CCATGGACGCCGGGAACATGCTCAAGCCCATGCTCGCGCGCGGCGAGCTGCGCATGGTGGGCGCCACCACCCTCGACGAG TACCGAGAGCGGATCGAGAAGGACCCCGCCCTGGAGCGGCGCTTCCAGCAGGTGCTGGTCGCCGAGCCGACCGTCGAGGA CTCCATCGCCATCCTGCGCGGACTCAAGGGACGCTACGAGGCCCACCACAAGGTGCAGATCGCGGACAGCGCGCTGGTGG CCGCCGCGAGCCTCTCCGACCGGTACATCACCTCGCGCTTCCTGCCCGACAAGGCCATCGACCTGGTCGACGAGGCCGCC TCCCGGCTGCGCATGGAGATCGACTCCTCTCCCGTCGAGATCGACGAACTCCAGCGCTCCGTCGACCGGCTGAAGATGGA GGAGCTGGCGATCGGCAAGGAGACCGACGCCGCCTCCCTGGAGCGCCTGGAGCGGCTGCGGCGCGACCTCGCCGACAAGG AGGAGGAGCTGCGCGGCCTCACCGCCCGCTGGGAGAAGGAGAAGCAGTCCCTCAACCGGGTCGGCGAGCTGAAGGAGAAG CTCGACGAACTGCGCGGGCAGGCCGAGCGCGCCCAGCGCGACGGCGACTTCGACACCGCCAGCAAGCTGCTCTACGGCGA GATCCCGGACCTGGAACGGGACCTGGAGGCCGCCTCCGAGGCCGAGGAAGAGGTCGCCCGGGACACCATGGTCAAGGAGG AGGTCGGCGCCGACGACATCGCCGACGTCGTCGCCTCCTGGACCGGCATCCCCGCCGGGCGCCTGCTCGAAGGGGAGACG CAGAAGCTGCTGCGCATGGAGGACGAGCTGGGCAAGCGGCTCATCGGCCAGACCCAGGCCGTGCGGGCCGTCTCCGACGC CGTACGGCGCAGCCGGGCCGGGATCGCCGACCCGGACCGCCCGACGGGTTCCTTCCTCTTCCTCGGCCCCACCGGCGTCG GCAAGACCGAGCTGGCCAAGGCGCTCGCCGACTTCCTCTTCGACGACGAGCGGGCCATGGTCCGCATCGACATGTCGGAG TACAGCGAGAAGCACAGCGTGGCCCGGCTGGTCGGCGCCCCGCCCGGGTACGTCGGCTACGAGGAGGGCGGCCAGCTCAC CGAGGCCGTGCGGCGGCGGCCGTACACCGTCGTACTGCTCGACGAGGTGGAGAAGGCGCACCCCGAGGTCTTCGACATCC TGCTCCAGGTGCTGGACGACGGCCGGCTCACGGACGGCCAGGGCCGCACCGTCGACTTCCGCAACACCATCCTGGTGCTC ACCTCCAACCTGGGCAGCCAGTACCTGGTCGACCCGACGACCGGCGAGGCGGAGAAGAAGCAGCAGGTCCTGGAGGTGGT CCGGTCCTCCTTCAAGCCGGAGTTCCTCAACCGGCTCGACGACCTGGTGGTCTTCTCGGCCCTCAGCCAGGAGGAGCTGA GCCGGATCGCACGGCTCCAGATCAACGGCCTGGCCCGGCGGCTCGCCGAACGCCGCCTCACCCTGGAGGTCACCGACGAG GCCCTCGCCTGGCTGGCCGAGGAGGGCAACGATCCGGCCTACGGCGCCCGCCCGCTGCGCCGCCTCGTGCAGACCGCGAT CGGCGACCGGCTCGCCCGGGAGATCCTCTCCGGCGAGATCAAGGACGGCGACACGGTCCGCGTGGACCGCTTCGGCGACG AGCTGATCGTGGGGCCGGCGAGCGGCAAGACGCTGTAG Protein sequence : MDAELTNRSRDAINAASNRAVTEGNADLTPAHLLLALLQGQDNENITDLLAAVEADLAAVRTGAERIVAGLPSVTGSTVA PPQPSREMLAVVADAQARAKELGDEYLSTEHLLLGIAAKGGAAGEVLEGQGASAKKLQEAFRKARGGRRVTTADPEGQYK ALEKFGTDLTAAARDGKLDPVIGRDQEIRRVVQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVKGDVPESLKDKRLVA LDLGAMVAGAKYRGEFEERLKTVLAEIKDSDGQVVTFIDELHTVVGAGAGGDSAMDAGNMLKPMLARGELRMVGATTLDE YRERIEKDPALERRFQQVLVAEPTVEDSIAILRGLKGRYEAHHKVQIADSALVAAASLSDRYITSRFLPDKAIDLVDEAA SRLRMEIDSSPVEIDELQRSVDRLKMEELAIGKETDAASLERLERLRRDLADKEEELRGLTARWEKEKQSLNRVGELKEK LDELRGQAERAQRDGDFDTASKLLYGEIPDLERDLEAASEAEEEVARDTMVKEEVGADDIADVVASWTGIPAGRLLEGET QKLLRMEDELGKRLIGQTQAVRAVSDAVRRSRAGIADPDRPTGSFLFLGPTGVGKTELAKALADFLFDDERAMVRIDMSE YSEKHSVARLVGAPPGYVGYEEGGQLTEAVRRRPYTVVLLDEVEKAHPEVFDILLQVLDDGRLTDGQGRTVDFRNTILVL TSNLGSQYLVDPTTGEAEKKQQVLEVVRSSFKPEFLNRLDDLVVFSALSQEELSRIARLQINGLARRLAERRLTLEVTDE ALAWLAEEGNDPAYGARPLRRLVQTAIGDRLAREILSGEIKDGDTVRVDRFGDELIVGPASGKTL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 5e-91 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB; SCH10.39c; SCH44.01c | NP_733613.1 | ATP-dependent protease ATP-binding subunit | VFG2076 | Protein | 2e-107 | 43 |
| clpB; SCH10.39c; SCH44.01c | NP_733613.1 | ATP-dependent protease ATP-binding subunit | VFG2084 | Protein | 5e-96 | 42 |
