Gene Information

Name : SCG20A.12c (SCO1032)
Accession : NP_625327.1
Strain : Streptomyces coelicolor A3(2)
Genome accession: NC_003888
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1091111 - 1091860 bp
Length : 750 bp
Strand : -
Note : SCG20A.12c, probable ABC transport system ATP-binding protein, len: 249 aa; similar to many, e.g. TR:CAB89461 (EMBL:AL354048) Streptomyces coelicolor ABC transport system ATP-binding protein SCE25.31, 256 aa; fasta scores: opt: 1112 z-score: 953.1 E(): 0;

DNA sequence : 
ATGACCACGACGACCGTCACCCGGGCCGCCGCCCGGGTCGTGGACGCCGTGAAGGTGTACGGCGGTGGCGACACCGCCGT
ACGCGCCCTCGACGGCGTCAGCGTCGACTTCCCGGCCGGCCGCTTCACCGCCATCATGGGGCCCTCCGGCTCCGGCAAGT
CCACCCTGATGCACTGCGCCGCCGGACTCGACACGCTCACCTCGGGCACCGCCCGCATCGGCGACACCGACCTGAGCACC
CTCGACGACCGCCGGCTGACCCTGTTGCGCCGCGACCGCGTCGGCTTCGTGTTCCAGGCGTTCAACCTGGTGCCGACGCT
GACCGTCGCCGAGAACATCACCCTCCCCCTCGACCTCGCCGGGCGCCGGGGCGACACCGAGTGGGTCGACGCGCTGATCG
ACGTCGTCGGACTGCGCGACCGCCTCCACCACCGGCCGGCCGAACTCTCCGGCGGGCAGCAGCAGCGCGTCGCCGTGGCC
CGCGCCTTCGCCGGACGGCCGGACGTGGTCTTCGCCGACGAGCCCACCGGCAACCTCGACTCCCGCTCCGGCGGCGAGGT
ACTGGGCCTGCTCGGCCGCACCGTCCGGCAGACCGGCCGCACCGTCGTCATGGTCACCCACGACCCCGTCGCCGCCGCCC
ACGCGGACGAGGTCGTCTTCCTCGCCGACGGACGCCTCGTCGACCGCATGGACGCGCCGAGTGCCGACAAGGTCCTGGAC
CGGATGAAAGCCTTCGAGGTGCCGTCGTGA

Protein sequence : 
MTTTTVTRAAARVVDAVKVYGGGDTAVRALDGVSVDFPAGRFTAIMGPSGSGKSTLMHCAAGLDTLTSGTARIGDTDLST
LDDRRLTLLRRDRVGFVFQAFNLVPTLTVAENITLPLDLAGRRGDTEWVDALIDVVGLRDRLHHRPAELSGGQQQRVAVA
RAFAGRPDVVFADEPTGNLDSRSGGEVLGLLGRTVRQTGRTVVMVTHDPVAAAHADEVVFLADGRLVDRMDAPSADKVLD
RMKAFEVPS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 4e-17 44
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-24 41
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-26 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 3e-26 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-26 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SCG20A.12c NP_625327.1 ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 1e-24 47
SCG20A.12c NP_625327.1 ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 3e-32 46
SCG20A.12c NP_625327.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 2e-29 46
SCG20A.12c NP_625327.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 4e-26 42
SCG20A.12c NP_625327.1 ABC transporter ATP-binding protein NC_012469.1.7685735. Protein 4e-19 41