Gene Information

Name : OmpR4 (TTE1633)
Accession : NP_623231.1
Strain : Thermoanaerobacter tengcongensis MB4
Genome accession: NC_003869
Putative virulence/resistance : Virulence
Product : response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1584674 - 1585396 bp
Length : 723 bp
Strand : -
Note : Best Blastp hit = gi|10802733|gb|AAG23588.1|AF244639_1 (AF244639) DNA-binding response regulator [Carboxydothermus hydrogenoformans], score 189, E-value 4.00E-47

DNA sequence : 
ATGCCTTATACTGTCCTGGTGATAGAAGATGAGATCCATATCTTAGAGCTATTGAGATATAATCTAGAGGCTGCAGGATA
TAAAGTCATGGCTTCGGAAAATGGGAAAGAAGGTTTGGAGAAAGCTTTGGAAGAAAAGCCGGATCTGCTGATACTAGATT
TGATGTTACCTGATATGGATGGGTTAGAGATATGCAAAGTGCTGAAGAAAAATGAGGATACTAAGAACATTCCAATAATA
ATGCTGACTGCAAGAAGTGAAGAATTTGATAAGGTATTGGGACTAGAACTGGGAGCTGATGATTACATTACTAAACCTTT
TAGTGTGAGAGAGCTTTTAGCTAGAATAAAGGCGGTTCTTCGGCGAACGCAGCAGGTAGAGGAAGAAAAAGAAGAAATAA
TAAAGTTTGGGGATATAGTGATAGATACTGGAAAGCATGTAGTGTACAAGAAAGGAAAGGCGCTGGATCTGACTTTGAAA
GAATTTGAGCTTTTAAAGCTCCTCTCTCAAAATAAAGGGAAAGTGCTGACGAGAGACTATTTGCTGGACAAGGTGTGGGG
ATACGAATACGCTGGTGAAACGAGGACTGTTGACGTTCACATAAGGCATTTGAGAAAGAAGATAGAAGATGACGACAAGG
CGCCTGTCTATATTGAGACTGTGCGAGGGATAGGTTACAAACTCAGAGACTTGAGTGAAGACAAAGGTGAAGAAGATGCT
TAG

Protein sequence : 
MPYTVLVIEDEIHILELLRYNLEAAGYKVMASENGKEGLEKALEEKPDLLILDLMLPDMDGLEICKVLKKNEDTKNIPII
MLTARSEEFDKVLGLELGADDYITKPFSVRELLARIKAVLRRTQQVEEEKEEIIKFGDIVIDTGKHVVYKKGKALDLTLK
EFELLKLLSQNKGKVLTRDYLLDKVWGYEYAGETRTVDVHIRHLRKKIEDDDKAPVYIETVRGIGYKLRDLSEDKGEEDA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-17 42
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 6e-24 41
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 2e-24 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
OmpR4 NP_623231.1 response regulator NC_002952.2859905.p0 Protein 1e-37 55
OmpR4 NP_623231.1 response regulator NC_007622.3794472.p0 Protein 1e-37 55
OmpR4 NP_623231.1 response regulator NC_002758.1121668.p0 Protein 1e-37 55
OmpR4 NP_623231.1 response regulator NC_009641.5332272.p0 Protein 1e-37 55
OmpR4 NP_623231.1 response regulator NC_013450.8614421.p0 Protein 1e-37 55
OmpR4 NP_623231.1 response regulator NC_007793.3914279.p0 Protein 1e-37 55
OmpR4 NP_623231.1 response regulator NC_003923.1003749.p0 Protein 1e-37 55
OmpR4 NP_623231.1 response regulator NC_002745.1124361.p0 Protein 1e-37 55
OmpR4 NP_623231.1 response regulator NC_009782.5559369.p0 Protein 1e-37 55
OmpR4 NP_623231.1 response regulator NC_002951.3237708.p0 Protein 1e-37 55
OmpR4 NP_623231.1 response regulator HE999704.1.gene2815. Protein 9e-35 55
OmpR4 NP_623231.1 response regulator NC_012469.1.7686381. Protein 7e-36 50
OmpR4 NP_623231.1 response regulator NC_012469.1.7685629. Protein 8e-32 50
OmpR4 NP_623231.1 response regulator AE016830.1.gene1681. Protein 2e-33 49
OmpR4 NP_623231.1 response regulator NC_005054.2598277.p0 Protein 1e-23 46
OmpR4 NP_623231.1 response regulator NC_014475.1.orf0.gen Protein 1e-23 46
OmpR4 NP_623231.1 response regulator AE000516.2.gene3505. Protein 2e-23 44
OmpR4 NP_623231.1 response regulator AF155139.2.orf0.gene Protein 4e-22 42
OmpR4 NP_623231.1 response regulator CP000034.1.gene3671. Protein 6e-27 42
OmpR4 NP_623231.1 response regulator FJ349556.1.orf0.gene Protein 1e-21 41
OmpR4 NP_623231.1 response regulator BAC0638 Protein 2e-18 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
OmpR4 NP_623231.1 response regulator VFG0596 Protein 6e-18 42
OmpR4 NP_623231.1 response regulator VFG1563 Protein 3e-24 41
OmpR4 NP_623231.1 response regulator VFG1702 Protein 1e-24 41
OmpR4 NP_623231.1 response regulator VFG1386 Protein 6e-22 41