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Name : lysS (MA0760) Accession : NP_615720.1 Strain : Methanosarcina acetivorans C2A Genome accession: NC_003552 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 885884 - 887419 bp Length : 1536 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGACTATGGAAATTAACAATACGGACCCGTCTGAAAATATGCCTCTGCCTGATGATGTTGATTTATCGGGCTCCAGGGC TTTTGATGACTCAAAACTTGCAAAATTAAACGGTATCATAAGCCAGGGACTCGATCCCTATCCCTACAGATTCGAAAAGA ACGGGGATATCTGCGAGATCCTGGTAAAGTTCGAGGACTTTGAAAAGAACGAAGGCTTATCTGTCCGGACTGCAGGCAGG CTCTACAATATCAGAAAGCACGGAAAAATGATATTTGCCGATCTAGGGGACCAGACCGGCAGGATTCAGGTTCTTATCAG GAAAGGGAACCTCCCTGACGAGGAATTCGCGACTTTCAAGAACCTTATGGATTCCGGAGATATCATAGGCATTCAGGGCG AGCTTTTCAGGACAAAAAGAGGGGAAAATTCAATCAGCGTATCCGAGTTTTCTCTGCTCTCCAAATCCCTCTGCGCCCTC CCCGAGAAGTTCCACGGCTTAAAAGATGTTGAAACAAGGTACAGGAAGAGATACCTTGACCTCATAGTCAATGCCGAAAA GAGGGAGATTTTCGTAATGAGGAGCAAGCTCATCTCGGAAATCAGAAGGTTCCTTGCTGACAGGGAATTTCTGGAGTTTG AAACCCCAATCCTCCAGACCGTGTACGGAGGAGCAAATGCAAGGCCCTTCAAGACTTTCCACAACTGCCTCGGGCAGAAC CTCTTCCTCAGGATCGCTCCGGAACTTTACCTCAAGAGGCTTGTCGTCGGCGGCTACGAGAAGGTCTTTGAGATTTCCAA AAACTTCAGAAACGAAGACATCGACACCACCCACAACCCCGAGTTCACAATGATCGAGGTCTACGAGGCTTACCGGGATT ATAACGATATGATGGATTTAACCGAAGCCCTGATCTCGGAACTCGTGTTCAGGCTGACAGGCGGCTACGAAGTCAAAATG GGCGAAAACACAATCAACCTCCGCTCCCCCTGGAAGAGGATTTCCATGGAAGGCGCCTTAAAAGAGTATGCGGGTCTTGA CGTCTTTTCCCATTCGCTTGAAGAACTGAAGCAAATCGCAATCCAGAACAGGATCGAGGACTACGAAAAGGCAAAGAGTC ATGGGGAGTTCCTTGCCCTGCTTTTTGAAGGTCTTGTAGAAGACAAGCTCGTAAACCCGACTTTCATCTACGACTTCCCG GTTGAAAACTCCCCTCTCGCTAAAAACCACAGAGAAAAAGAAGGTTTTGTTGAGCGTTTCGAACTCTTCCTCAACGGCTG GGAACTGGCAAACGGCTATTCAGAATTAAACGACCCCCTCGAACAGGAAAAGAGGTTCGAAGAACAGGACAAGAAAAGAA AGCTCGGAGACCTTGAAGCCCAGACCGTTGATTATGACTTCATAAACGCCCTCGGATACGGCCTGCCCCCGACCGGTGGT ATGGGGCTCGGAATCGACCGCCTTACAATGATTCTTGCGGGCCTTGAGTCCATCAAGGAAGTAATCCTTTTCCCGCAGAT GAAAAGGGAGGACTGA Protein sequence : MTMEINNTDPSENMPLPDDVDLSGSRAFDDSKLAKLNGIISQGLDPYPYRFEKNGDICEILVKFEDFEKNEGLSVRTAGR LYNIRKHGKMIFADLGDQTGRIQVLIRKGNLPDEEFATFKNLMDSGDIIGIQGELFRTKRGENSISVSEFSLLSKSLCAL PEKFHGLKDVETRYRKRYLDLIVNAEKREIFVMRSKLISEIRRFLADREFLEFETPILQTVYGGANARPFKTFHNCLGQN LFLRIAPELYLKRLVVGGYEKVFEISKNFRNEDIDTTHNPEFTMIEVYEAYRDYNDMMDLTEALISELVFRLTGGYEVKM GENTINLRSPWKRISMEGALKEYAGLDVFSHSLEELKQIAIQNRIEDYEKAKSHGEFLALLFEGLVEDKLVNPTFIYDFP VENSPLAKNHREKEGFVERFELFLNGWELANGYSELNDPLEQEKRFEEQDKKRKLGDLEAQTVDYDFINALGYGLPPTGG MGLGIDRLTMILAGLESIKEVILFPQMKRED |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 1e-92 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | NP_615720.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 7e-93 | 43 |
