Gene Information

Name : istB (MA4133)
Accession : NP_619001.1
Strain : Methanosarcina acetivorans C2A
Genome accession: NC_003552
Putative virulence/resistance : Unknown
Product : IstB helper protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG1484
EC number : -
Position : 5050740 - 5051513 bp
Length : 774 bp
Strand : +
Note : -

DNA sequence :
ATGAACAACTTCACCTATGAGAGACTTCACAATAACCTGCAATACCTGAAACTTAATTCTATCGAAGAGCTTCTGGATAA
CTACCTTGAAATTGCTGCAAGGGACAACAAGACAACAATGGAAGTCCTTGATTACTTGTTTGAACAGGAAAAGAAACACA
GAGAAGCTGTTGCAATTGAGAGAAGGATGAAAAGTGCAGTTTTTCCCGTTAAAAAGACTCTTGAGGAATTCGATTTTGAA
TTTCAGAAATCCATTGATAAAAAAGCAATCGAAGACCTTGCAACCTTGAGATTTGTTCATAATTCAGAGAATGTCGTTTT
CCTTGGTCCTCCCGGAGTTGGAAAGTCTCATCTTGCAATCGCTCTTGGGATTGAAGTAGCAAAAGCAGGGATTTCGGTTT
ACTTTACCAATACAGGAAACCTTATCGAGAAGTTGAAAATAGCAAATCGAGAAGGAATGCTTGAAAAGAAACTAAGGGAC
TTGATGAAATATAAAGTGCTGATAATTGACGAAATAGGGTATCTCCCATTTGACGAAGAAGGAGCTCACTGCCTATTTCA
GCTGATCTCAAGACGGTATGAAAAGAGTTCAACGATCTTGACATCAAATAAATCATATGGAGAATGGGGAGAGATATTCA
AGGACCATGTAATAGCGGCTGCTGTACTTGATAGGATTCTCCACCATTCAACTACGATTAACATCAAAGGGGAAAGTTAC
AGGCTGAAAGAAAGGAAGAAACAGGGAATAAAAACAGGAAATATATGCCAGTAA

Protein sequence :
MNNFTYERLHNNLQYLKLNSIEELLDNYLEIAARDNKTTMEVLDYLFEQEKKHREAVAIERRMKSAVFPVKKTLEEFDFE
FQKSIDKKAIEDLATLRFVHNSENVVFLGPPGVGKSHLAIALGIEVAKAGISVYFTNTGNLIEKLKIANREGMLEKKLRD
LMKYKVLIIDEIGYLPFDEEGAHCLFQLISRRYEKSSTILTSNKSYGEWGEIFKDHVIAAAVLDRILHHSTTINIKGESY
RLKERKKQGIKTGNICQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
orfB CAE85183.1 OrfB protein, transposase, IS100 Not tested PAI V 536 Protein 2e-47 48
unnamed CAA21402.1 - Not tested HPI Protein 2e-47 48
api84 CAF28558.1 putative transposase Not tested YAPI Protein 2e-47 48
y1093 CAC43411.1 IS100 transposase; transposase ORFA Not tested PAI III 536 Protein 2e-47 48
y1093 CAD66188.1 transposase Orf B, insertion element IS100 Not tested PAI III 536 Protein 2e-47 48
unnamed CAB46598.1 IS100 transposase Not tested HPI Protein 2e-47 48
s0036 CAD33774.1 ORF B protein Not tested PAI I 536 Protein 2e-47 48
y1093 CAD42087.1 OrfB protein of IS100 transposase Not tested PAI II 536 Protein 2e-47 48
YPTB1586 YP_070114.1 transposase/IS protein Not tested HPI Protein 2e-47 48
YPO1901 YP_002346891.1 transposase/IS protein Not tested HPI Protein 2e-47 48
y2410 NP_669717.1 transposase/IS protein Not tested HPI Protein 2e-47 48
aec58 AAW51741.1 Aec58 Not tested AGI-3 Protein 2e-47 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
istB NP_619001.1 IstB helper protein VFG1627 Protein 9e-48 48
istB NP_619001.1 IstB helper protein VFG1606 Protein 9e-48 48
istB NP_619001.1 IstB helper protein VFG1663 Protein 1e-47 48
istB NP_619001.1 IstB helper protein VFG1515 Protein 9e-48 48