Gene Information

Name : istB (MA2201)
Accession : NP_617117.1
Strain : Methanosarcina acetivorans C2A
Genome accession: NC_003552
Putative virulence/resistance : Unknown
Product : IstB helper protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG1484
EC number : -
Position : 2709172 - 2709945 bp
Length : 774 bp
Strand : -
Note : -

DNA sequence :
ATGAACAATTTCAGCTATGAGAGACTTCACAGTAACCTGCAATACCTCAAACTGAATACTATTGAAGAGGTTCTGGACAA
CTATCTTGAAATTGCTGCAAGAGATAGCAAGACAACAATGGAAGTACTTGATTATCTGTTTGAACAGGAAAAGAAGCACA
GAGAAGCTGCTGCAATTGAGAGAAGGATGAAAAGTGCAGCATTTCCTGTGAAAAAGACGCTTGATGAATTCGATTTTGAG
TTTCAGTCATCTATTGATAAAAAAGTCATAGAAGACCTTGCAACGTTGAGATTTGTTCATAACGTAGAAAACGTTGTTTT
CCTTGGTCCTCCCGGAGTTGGAAAGTCTCATCTTGCAATCGCTCTTGGGATTGAAGTAGCAAAAGCAGGGATTTCGGTTT
ACTTTACCAATACAGGAAACCTTATCGAGAAGTTGAAAATAGCAAATCGAGAAGGAATGCTTGAAAAGAAACTCAAAGGC
TTTATGAAATTTAAAGTTCTGATCATTGATGAAATGGGTTATCTCCCATTTGATGAGGAAGGAGCTCACTGTTTATTTCA
GTTGATTTCCAGACGTTATGAAAAGAGTTCGACCATCTTTACGTCAAATAAATCATATGGAGAATGGGGAGAGATATTCA
AAGACCAGGTAATAGCGGCTGCTGTACTTGATAGAATTCTCCATCACTGTACTACAATTAACATCAGAGGAGAAAGTTAC
AGGCTGAAAGAAAGGAAGAAACATGGTATAAAATCAGGAAATATCTACCAGTAA

Protein sequence :
MNNFSYERLHSNLQYLKLNTIEEVLDNYLEIAARDSKTTMEVLDYLFEQEKKHREAAAIERRMKSAAFPVKKTLDEFDFE
FQSSIDKKVIEDLATLRFVHNVENVVFLGPPGVGKSHLAIALGIEVAKAGISVYFTNTGNLIEKLKIANREGMLEKKLKG
FMKFKVLIIDEMGYLPFDEEGAHCLFQLISRRYEKSSTIFTSNKSYGEWGEIFKDQVIAAAVLDRILHHCTTINIRGESY
RLKERKKHGIKSGNIYQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aec58 AAW51741.1 Aec58 Not tested AGI-3 Protein 2e-46 47
y1093 CAC43411.1 IS100 transposase; transposase ORFA Not tested PAI III 536 Protein 1e-46 42
y1093 CAD66188.1 transposase Orf B, insertion element IS100 Not tested PAI III 536 Protein 2e-46 42
unnamed CAB46598.1 IS100 transposase Not tested HPI Protein 1e-46 42
s0036 CAD33774.1 ORF B protein Not tested PAI I 536 Protein 1e-46 42
y1093 CAD42087.1 OrfB protein of IS100 transposase Not tested PAI II 536 Protein 1e-46 42
YPTB1586 YP_070114.1 transposase/IS protein Not tested HPI Protein 2e-46 42
orfB CAE85183.1 OrfB protein, transposase, IS100 Not tested PAI V 536 Protein 1e-46 42
unnamed CAA21402.1 - Not tested HPI Protein 2e-46 42
api84 CAF28558.1 putative transposase Not tested YAPI Protein 1e-46 42
y2410 NP_669717.1 transposase/IS protein Not tested HPI Protein 1e-46 42
YPO1901 YP_002346891.1 transposase/IS protein Not tested HPI Protein 1e-46 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
istB NP_617117.1 IstB helper protein VFG1606 Protein 7e-47 42
istB NP_617117.1 IstB helper protein VFG1663 Protein 9e-47 42
istB NP_617117.1 IstB helper protein VFG1515 Protein 7e-47 42
istB NP_617117.1 IstB helper protein VFG1627 Protein 7e-47 42