|
Name : smpB (spyM18_0563) Accession : NP_606758.1 Strain : Streptococcus pyogenes MGAS8232 Genome accession: NC_003485 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 448186 - 448653 bp Length : 468 bp Strand : + Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGGCAAAAGGTGAAGGTCATATACTGGCGCAAAATAAAAAGGCTAGACTTGATTATCACATTGTTGAAACCGTTGAAGC AGGGATTGTCTTAACGGGAACTGAGATTAAAAGTGTTCGTGCAGCTCGTATTCAACTGAAAGATGGCTTTGCCCAAATTA AGAATGGGGAAGCGTGGTTGGTCAACGTGCATATTGCACCTTTTGAACAAGGTAATATTTGGAACGCTGATCCTGAACGA ACCCGCAAACTGCTGCTCAAAAAACGTGAGATTACGCATCTAGCAAATGAACTCAAAGGAACTGGCATGACTTTGGTTCC TCTCAAAGTTTACCTCAAGGATGGCTTTGCTAAAGTTCTGATTGGTCTAGCTAAAGGGAAACACGATTATGACAAACGCG AAACCATTAAACGCCGTGATCAGGAAAGAGATATTAAAAAACAAATGAAACACTACAATGCAAGGTAA Protein sequence : MAKGEGHILAQNKKARLDYHIVETVEAGIVLTGTEIKSVRAARIQLKDGFAQIKNGEAWLVNVHIAPFEQGNIWNADPER TRKLLLKKREITHLANELKGTGMTLVPLKVYLKDGFAKVLIGLAKGKHDYDKRETIKRRDQERDIKKQMKHYNAR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 5e-37 | 57 |
| smpB | YP_001800894.1 | SsrA-binding protein | Not tested | Not named | Protein | 7e-34 | 48 |
