|
Name : ureC (NCgl0085) Accession : NP_599338.1 Strain : Corynebacterium glutamicum ATCC 13032 Genome accession: NC_003450 Putative virulence/resistance : Virulence Product : urease subunit alpha Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG0804 EC number : 3.5.1.5 Position : 91992 - 93704 bp Length : 1713 bp Strand : + Note : ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alp DNA sequence : ATGAGTTTTGAGATTTCCCGCAAGCAGTACACCGACCTTTATGGTCCAACCGTTGGCGATTCAGTACGTCTTGCTGATAC TGAGCTTTTTCTCTGTGTGGAAAAAGATTACGCAGCAATCGGCGAAGAAGTAGCATTCGGCGGTGGCAAGGTCATTCGTG ATGGCATGGGCCAAAATGGCACCTTGGTTCGCGATGTAGATATTCCCGATACCGTCATCACCAACGTCATCGTCCTTGAC TATACGGGTGTGTACAAAGCTGACGTTGCGCTTCGAGATGGCAAAATCTTCCGAATCGGAAAGGCCGGAAACCCGAATGT CATGGAAAACGTCGACATCGTCATCGGCGTTGCCACCGACATCATTGCTGGTGAAGGCAAAATCCTTACCGCAGGTGGCA TCGACACGCACGTGCACTTCTTGGGCACAGACCAGGTCAACACTGCATTAGCATCAGGTATCACCACGATGATCGGTGGA GGCACCGGCCCAAGCCAGGCGTCGATGGCTACAACTGTCACGCCAGGTCAGTGGAATACCTACAACATGCTTAGTGCTTT TGAAGGCATGCCCATGAACTTTGGCATTTTGGGTAAAGGCCATGGTTCTTCCAAATCTCCGCTGGCTGAGCAGGTTCGTG CGGGTGCAATCGGTCTGAAAATTCACGAGGACTGGGGTGCCACACCATCGTCGATCAACACTGCCCTAGAAGTAGCCGAT GACATGGACATCCAGGTGGCACTCCACTCCGATACCTTGAATGAGGCCGGTTTTGTGGAAGACACCATTGAAGCCATTGC GGGCCGAGTCATCCATACCTTCCACACCGAAGGTGCTGGTGGTGGACACGCTCCTGACCTAATCCGAGTGGCTGCTCTGC CAAACGTGTTGCCTGCATCCACCAACCCAACGCTCCCATACACCCGAAACACTGTTGAAGAGCACCTGGACATGGTGATG GTTGCCCACCACCTCAACCCAGATATTCCAGAAGACGTGGCTTTTGCGGATTCCCGAATTCGTGCCGAAACGATTGCAGC CGAAGATGTGCTTCACGATATGGGTATCTTCTCTATCACCTCTTCGGATTCCCAGGCGATGGGCCGAGTAGGAGAGACCA TCACGCGCACGTGGCAGGTCGCCGACCATATGAAACGCACCCGTGGATCACTAACGGGAGATGCTCCATACAACGACAAC AACCGCTTGCGTCGATTCATCGCAAAATACACCATCAACCCTGCGATTGCGCACGGTGTGGATTATGTTGTCGGTTCAGT GGAGGAAGGCAAGTTCGCTGACCTCGTGCTGTGGGATCCAAAGTTCTTTGGTGTGAAACCTGATCTGGTGATCAAGGGTG GGTTGATGGTCAATTCCCTCATGGGTGATTCCAACGGTTCCATTCCAACTCCGCAGCCCCGCACCCTGCGCAATACTTGG GGTGCGTTTGGCCAGGCAGTTTCCAGAAGCTCCATTACATTCCTATCCCAGGACGCTATCGATGCAAATGTTCCTGATCT GCTGAATCTGAGGAAGCAGATCCGGGGCGTTCGAGGTGTAAGGAATCTGACCAAACGAGACATGAAACTCAATGCAGAAA TGCCTGATATTCGTGTCGATCCAGAGACCTACCAGGTGTTTGTCAACGGTGAGTTGATCACCAGCAAGCCAGCAGAGACA GTGCCAATGGCACGTCGCTACTTCTTGTTCTAA Protein sequence : MSFEISRKQYTDLYGPTVGDSVRLADTELFLCVEKDYAAIGEEVAFGGGKVIRDGMGQNGTLVRDVDIPDTVITNVIVLD YTGVYKADVALRDGKIFRIGKAGNPNVMENVDIVIGVATDIIAGEGKILTAGGIDTHVHFLGTDQVNTALASGITTMIGG GTGPSQASMATTVTPGQWNTYNMLSAFEGMPMNFGILGKGHGSSKSPLAEQVRAGAIGLKIHEDWGATPSSINTALEVAD DMDIQVALHSDTLNEAGFVEDTIEAIAGRVIHTFHTEGAGGGHAPDLIRVAALPNVLPASTNPTLPYTRNTVEEHLDMVM VAHHLNPDIPEDVAFADSRIRAETIAAEDVLHDMGIFSITSSDSQAMGRVGETITRTWQVADHMKRTRGSLTGDAPYNDN NRLRRFIAKYTINPAIAHGVDYVVGSVEEGKFADLVLWDPKFFGVKPDLVIKGGLMVNSLMGDSNGSIPTPQPRTLRNTW GAFGQAVSRSSITFLSQDAIDANVPDLLNLRKQIRGVRGVRNLTKRDMKLNAEMPDIRVDPETYQVFVNGELITSKPAET VPMARRYFLF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ureC | NP_287088.1 | urease subunit alpha | Not tested | TAI | Protein | 1e-168 | 63 |
| ureC | NP_286680.1 | urease subunit alpha | Virulence | TAI | Protein | 1e-168 | 63 |
| ureC | YP_005684266.1 | Urease alpha subunit | Not tested | PiCp 7 | Protein | 4e-176 | 63 |
| ureC | YP_005682174.1 | Urease alpha subunit | Not tested | PiCp 7 | Protein | 2e-178 | 63 |
| ureC | YP_003784325.1 | urease subunit alpha | Not tested | PiCp 7 | Protein | 2e-178 | 63 |
| ureC | YP_005686358.1 | Urease alpha subunit | Not tested | PiCp 7 | Protein | 2e-178 | 63 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ureC | NP_599338.1 | urease subunit alpha | VFG0270 | Protein | 6e-146 | 59 |
