Gene Information

Name : Cgl0254 (NCgl0250)
Accession : NP_599507.1
Strain : Corynebacterium glutamicum ATCC 13032
Genome accession: NC_003450
Putative virulence/resistance : Unknown
Product : RNA polymerase sigma factor
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 273539 - 274120 bp
Length : 582 bp
Strand : -
Note : Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate

DNA sequence :
GTGAAGTCAAAAGAGCGTAACGACGCCCACGTCACCGAGCTGGCCCTAGCCGCCGGCCGTGGCGACCGCGCAGCTCTCAC
CGATTTCATCCGGGAAACCCAAGACGATGTCTGGCGTCTCCTCGCCCACCTTGGCGGCCACGAAATCGCCGACGATCTAA
CCCAAGAAACTTATCTGCGGGTCATGAGCGCCCTCCCCCGCTTCGCAGCGCGCTCCTCGGCGCGCACCTGGCTACTATCG
CTAGCCCGGCGCGTCTGGGTCGACAACATCCGACACGACATGGCACGCCCCCGCAAATCCATCGTCGAATACGAAGACAC
CGGTGCCACCGACGCGAGCAACGCAGGCATCTGGTCCGAGTGGATCGACGTGCGCACGCTTATCGACGCCCTCCCACCCG
AACGCCGCGAAGCCCTCATCCTCACCCAAGTGTTGGGCTACACCTACGAAGAAGCCGCAAAAATCGCCGACGTCCGAGTC
GGAACAATCCGTTCCCGCGTAGCCCGCGCCAGAGCGGACCTCATTGCTGCAACAGCTACCGGTGATTCCTCAGCCGAAGA
TGGCAAATCCGCCCAAGGTTAG

Protein sequence :
MKSKERNDAHVTELALAAGRGDRAALTDFIRETQDDVWRLLAHLGGHEIADDLTQETYLRVMSALPRFAARSSARTWLLS
LARRVWVDNIRHDMARPRKSIVEYEDTGATDASNAGIWSEWIDVRTLIDALPPERREALILTQVLGYTYEEAAKIADVRV
GTIRSRVARARADLIAATATGDSSAEDGKSAQG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sigC YP_005126716.1 ECF-family sigma factor C Not tested Not named Protein 1e-52 80