Gene Information

Name : HCM1.279bc (HCM1.279bc)
Accession : NP_569463.1
Strain :
Genome accession: NC_003384
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 213149 - 213385 bp
Length : 237 bp
Strand : -
Note : similar to (EMBL:AE000133) ykfF from Escherichia coli

DNA sequence :
ATGAGCGATTTATTCAGCAGCGAATCACCGGTAACACTGGCTCAGGCACGCACTGTCGCCGCTGGGTACCAGAACGTCTT
TATCGAAAACCTCCAGCCAGCAGGCCATTTCCAGATTGTCATCCGTGATCATCGCGACCACGACAGCCAGCTGGTCTGGC
GAAACTGGAATTATGAATCCGGTGCCAATGATGCGCTCAATAGCTACCTGCAAAGCCATGGGCTGAAGGCCAGTTGA

Protein sequence :
MSDLFSSESPVTLAQARTVAAGYQNVFIENLQPAGHFQIVIRDHRDHDSQLVWRNWNYESGANDALNSYLQSHGLKAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD33784.1 hypothetical protein Not tested PAI I 536 Protein 3e-09 44
ORF_46 AAZ04455.1 conserved hypothetical protein Not tested PAI I APEC-O1 Protein 3e-09 44
ykfF CAE85198.1 YkfF protein Not tested PAI V 536 Protein 1e-08 43
c5157 NP_757005.1 hypothetical protein Not tested PAI II CFT073 Protein 1e-08 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HCM1.279bc NP_569463.1 hypothetical protein VFG1525 Protein 1e-09 44