Gene Information

Name : HCM1.245c (HCM1.245c)
Accession : NP_569432.1
Strain :
Genome accession: NC_003384
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : R : General function prediction only
COG ID : COG4747
EC number : -
Position : 180517 - 180903 bp
Length : 387 bp
Strand : -
Note : similar to (EMBL:AP000342) ydjB from Shigella flexneri plasmid R100

DNA sequence :
ATGTTTGATGTTCACGTTGTTTTAGATAATCAAATAGGACAATTAGCATTACTAGGAAAAACATTAGGTAATAAAGGTAT
TGGATTGGAAGGGGGAGGGATATTTACGGTTGGTGATGAATGCCATGCTCATTTTCTTGTTGAACAAGGAAAGGAAGCTA
AAATAGCGCTAGAGCAAGCTGGACTGTTAGTACTTGCGATCCGGACACCATTAATTCGTAAGTTAAAACAGGAAAAACCG
GGGGAACTTGGCGAAATAGCACGAGTATTGGCGGAGAATAACATTAATATTTTAGTGCAATACAGTGACCATGCTAACCA
ACTGATATTAATAACGGACAATGATAGTATGGCTGCATCTGTTACGCTCCCTTGGGCAATAAAGTGA

Protein sequence :
MFDVHVVLDNQIGQLALLGKTLGNKGIGLEGGGIFTVGDECHAHFLVEQGKEAKIALEQAGLLVLAIRTPLIRKLKQEKP
GELGEIARVLAENNINILVQYSDHANQLILITDNDSMAASVTLPWAIK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08442.1 unknown Not tested SRL Protein 6e-45 100
unnamed AEA34670.1 hypothetical protein Not tested Not named Protein 7e-45 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HCM1.245c NP_569432.1 hypothetical protein VFG1033 Protein 2e-45 100