Gene Information

Name : CPE0493 (CPE0493)
Accession : NP_561409.1
Strain : Clostridium perfringens 13
Genome accession: NC_003366
Putative virulence/resistance : Virulence
Product : capsular polysaccharide biosynthsis protein
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG2148
EC number : -
Position : 615362 - 616030 bp
Length : 669 bp
Strand : +
Note : similar to C-terminal of prf:2512318F Cps2E protein from Streptococcus pneumoniae (455 aa); 47% identity in 198 aa overlap. 1 transmembrane region was found by PSORT

DNA sequence : 
ATGTATGAATCTGTGGAGAAGGTTCAAGAAAGAGAAGAATATATAAAAGCAGATCAAGGAAATAGAATATACTTATTTTT
TAAGAGAGTAATAGATATTCTTGGATCAGGCTTTGGATTAATCATATTAAGTCCATTATTTTTGATTGTAGCAATAGCTA
TAAAAATTGAAGATAGCAAGGGGCGTGTACTATTTTCACAAAAAAGAGTGGGACAGTATGGTAAAGAGTTTAATATGTAC
AAATTTAGATCCATGGTCAGTAATGCAGAAGAGCTTAAAGCTAAGCTTATGGAACAAAACGAAATGTCAGGACCTATGTT
TAAAATGAAACATGATCCTAGAATAACTAAGGTTGGAAAGTTTATAAGAAAAACTAGTATAGATGAACTTCCTCAGCTTA
TAAATATTCTTAAGGGTGAAATGAGCTTAGTTGGTCCTAGACCAAGCCTTCCAAAGGAAGTAGCTAAATTTGAACCTTGG
ATGTTAGAAAGGTTAGAAGTAAAGCCAGGATTAACATGTTATTGGCAAGTTATGGGAAGAAATGATATAGATTTTGAAGA
TTGGATGAAGCTTGATATAAAGTATGTTCATGATAGAAATTTTTGGTTAGATATAAAGTTAATTTTTAAAACATTTTTTG
TGCTTTTTGGAGATGAAAGTGCAAGTTAA

Protein sequence : 
MYESVEKVQEREEYIKADQGNRIYLFFKRVIDILGSGFGLIILSPLFLIVAIAIKIEDSKGRVLFSQKRVGQYGKEFNMY
KFRSMVSNAEELKAKLMEQNEMSGPMFKMKHDPRITKVGKFIRKTSIDELPQLINILKGEMSLVGPRPSLPKEVAKFEPW
MLERLEVKPGLTCYWQVMGRNDIDFEDWMKLDIKYVHDRNFWLDIKLIFKTFFVLFGDESAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSP0070 YP_300160.1 capsular polysaccharide synthesis protein Not tested SCC15305cap Protein 6e-27 45
cap1N AAL26667.1 type 8 capsule synthesis gene Virulence SCCcap1 Protein 3e-27 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CPE0493 NP_561409.1 capsular polysaccharide biosynthsis protein VFG1369 Protein 2e-16 44
CPE0493 NP_561409.1 capsular polysaccharide biosynthsis protein VFG1309 Protein 8e-27 42