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Name : CPE0463 (CPE0463) Accession : NP_561379.1 Strain : Clostridium perfringens 13 Genome accession: NC_003366 Putative virulence/resistance : Virulence Product : capsular polysaccharide biosynthesis protein Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 583751 - 585664 bp Length : 1914 bp Strand : + Note : similar to gp:AF155805_2 Cps9E from Streptococcus suis (608 aa); 43.4% identity in 588 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT. DNA sequence : ATGGAGAAAGAAGGTAAAGTTAAGGCTCTGTTTTTGATGTCATTAGATATTCTAATAATAGTAAATTCTTATATATTAGC GTTTACAATAAGATTTAACTTTGATTTTATTATGGATAAAAGAAATGAATTGATATTATTTTTACCAGTAATAGTAATAA TATATTTAATTATGCTATCTATATTTAAAATGTATAAGAGTATATGGACTATTGTAGGAATTGATGAAGTAGCTTTTGGA TTAATAGCTTGTTTAATTGCTACAGGTATTATATTAATTACTAGTACAATTATATCAAGTATATATTATATAGATTATAT TACAGTGCTTTTAGCAGGACTATTTATAATGATTTTTACAATAGGAATAAGGGTGTCGTTTAGAATTTACAGAAGAATGA TTTCACACGGCAGAGTTTTATTAAATTCAAGTAATATTAGTAATTTGGAAAAAATATTAATAATAGGAGCTGGTTCATGT GGACAGCTTATAATAGAAGAAATTAGAAAACAAAATCCTATTAAACAGAAGGTCATTGGGGTTATAGATGATAATCCAAG TAAGATAGGTACGTATCTTAGGGGAATTAAAATTCTTGGTAATAGGAATAAAATTATAGAGATATCAGAAGAAAAAAATG TTGATTTAATACTTATTGCTATGCCTTCAGTTGATGGAAAAACTAAGAAAGAGATTATAGAAATATGCCAAAGTACAAGA GCAAAAGTTAAAATAATTCCAGGAATGTATGAACTTATAGGAGGAAAAGTAAGTTTAAACAGAATGAGGGATATAGATTT ACGCGATCTTTTAGGGCGAGAAGAAGTTATTTTAGATAAGAAAGGAATAAAGGACTATATAGAAAATAAAGTAGTTATGG TAACTGGCGGGGGAGGATCAATAGGTTCCGAGTTATGTCGTCAAATAGCTAAATTTTCACCTAAATTACTTCTAATTTTA GATATTTATGAAAATAATGCATATGAACTTGAAAATGAAATTATAAGTAATTTTAAAAATCTCAAAGAAAAGGTATTAAT AGCTTCTGTAAGAGAGGAAAAGCGTCTTGAAAATATATTTAATGAATATAAGCCACAAGTAATTTTTCATGCTGCGGCTC ATAAACATGTTCCTCTTATGGAACGTAACCCAGAAGAAGCGATTAAAAATAATGTTATTGGAACATTAAATGTTGCAGAA TGTGCACATAAATACGGAGCTGAAAGATTTGTATTAATTTCAACGGATAAGGCTGTTAATCCAACAAATGTGATGGGAGC TTCAAAAAGAATGTGCGAAATGATAATACAAGCTATAGATAAAAATTCTAATACGGAATTTGTTGCTGTAAGATTTGGTA ACGTTCTTGGAAGCAATGGGTCTGTAATTCCATTATTTAAAAAACAAATTGCTAAAGGAGGACCAGTAACTCTTACTCAC AAAAAAATAACAAGGTATTTTATGCTTATTCCAGAGGCTGCTCAGCTTGTTCTTCAGGCAGGAGCTTATGCAAAAGGTGG AGAAATATTTGTACTTGATATGGGTAATCCAGTACTAATATATGATTTAGCTAAAGATTTAATAAAGCTTTCAGGATTTG AACCAGAAGTTGATATAAAAATAGAAATAACAGGTCTTAGACCAGGTGAAAAATTATACGAAGAACTTCTTATGGATGAA GAAGGGTTAAGAAAAACAAGTCATGAAAAGATATTTATTGCTAAGCCGGGGGAGTATGATTTTGAAATGTTAAAGTTAGG CGTAAATGCTTTAAAAAAAATTGCTGATCTTGGGGATGTGGAAACACTAAAAACAGCACTTCAATTTATTGTAAAGACAT ATAAAAGGTTGGACACTGAAAATAATAGTGTTTTTAATGAGGTTGCGTTACATGAAGCAAGTGAAGCAATATAA Protein sequence : MEKEGKVKALFLMSLDILIIVNSYILAFTIRFNFDFIMDKRNELILFLPVIVIIYLIMLSIFKMYKSIWTIVGIDEVAFG LIACLIATGIILITSTIISSIYYIDYITVLLAGLFIMIFTIGIRVSFRIYRRMISHGRVLLNSSNISNLEKILIIGAGSC GQLIIEEIRKQNPIKQKVIGVIDDNPSKIGTYLRGIKILGNRNKIIEISEEKNVDLILIAMPSVDGKTKKEIIEICQSTR AKVKIIPGMYELIGGKVSLNRMRDIDLRDLLGREEVILDKKGIKDYIENKVVMVTGGGGSIGSELCRQIAKFSPKLLLIL DIYENNAYELENEIISNFKNLKEKVLIASVREEKRLENIFNEYKPQVIFHAAAHKHVPLMERNPEEAIKNNVIGTLNVAE CAHKYGAERFVLISTDKAVNPTNVMGASKRMCEMIIQAIDKNSNTEFVAVRFGNVLGSNGSVIPLFKKQIAKGGPVTLTH KKITRYFMLIPEAAQLVLQAGAYAKGGEIFVLDMGNPVLIYDLAKDLIKLSGFEPEVDIKIEITGLRPGEKLYEELLMDE EGLRKTSHEKIFIAKPGEYDFEMLKLGVNALKKIADLGDVETLKTALQFIVKTYKRLDTENNSVFNEVALHEASEAI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 5e-87 | 44 |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 9e-90 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| CPE0463 | NP_561379.1 | capsular polysaccharide biosynthesis protein | VFG0029 | Protein | 2e-80 | 44 |
| CPE0463 | NP_561379.1 | capsular polysaccharide biosynthesis protein | VFG1300 | Protein | 2e-87 | 42 |
