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Name : CPE2286 (CPE2286) Accession : NP_563202.1 Strain : Clostridium perfringens 13 Genome accession: NC_003366 Putative virulence/resistance : Virulence Product : secretion system protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 2630122 - 2631813 bp Length : 1692 bp Strand : - Note : similar to gpu:AE004128_11 MSHA biogenesis protein MshE from Vibrio cholerae (575 aa); 41% identity in 558 aa overlap DNA sequence : TTGATTAGTTATCAGAAAAAGCGTTTAGGAGATATACTAATTGAATCGGGAAAGCTTACAGAGGATAGGCTTAAAGAAGC ATTATTGATTCAGAAGCAAGTTGGCAAGAGGCTTGGAGAGATCTTAGTTGAACAAAACTTTGTTACTGAAGAGGATATAA TAGAAGTTTTAGAAAAACAATTAAATATTGAAAGAGTAAATCTTGAAATTATAACAATAGATAGAAGAGCTATAAAGATG ATTTCGGAAAATGTTTGTAGAAAGCATTTAATAGTTCCGTATGAAATAGATGATAATACCATAAAGGTTGCAATGGCAGA TCCCTTAGATATAGTTGCAATAGATGATGTTGAGATTTCTACAGGTTTAAATGTGCGTCCGTATATAGCTGTAAAACAAT CTATTCAAAGAACTATAGATATATATTATTCAAACCAAAAGGTTTTATTAGCAGCGGAAGAATTAACAAAAGCTTCTGAT GAAGAAAGCAATGAACTTAATTTAGACAAAATTGAGGAAATAGACAACTTAGATAATGCTCCTATTGTAAAAATGATAGA GTATGTTATTAAAAATGCAGTTGAGGAAAGAGCTAGTGATATACATATTGAAACTTATGAAAATATATTAAGAATTAGAT ATAGAATAGATGGTAAGTTACATACAATATCTACTTTGCCAGTAGATACTCTAGCTCCTTTAGTTACTCGTGTTAAAATC CTAGCTAACTTAGATATATCAGAGAAAAGACTTCCTCAAGATGGAAGAATTCTTACTAAGGTTGGAGATAAGCAAATAGA CTTAAGGGTATCTATTCTTCCTATGATAACAGGAGAAAAGATAGTTATAAGAATAATAAATAAGGAAAATTTCATAATTT CTAAGGAAGGACTTGGACTGAAAAATTTTGAGCTTTCTCTGCTAGACAAAATAACAAAGCATTCTAATGGAATAATTCTT GTTACTGGTCCTACAGGGAGTGGTAAAACAACAACACTCTATACTATTTTAAATGAGCTAAACACAGAAAGTAAAAATAT TATTACAATAGAAGATCCTGTTGAAGTATCAATTGAAGGAATTAACCAAGTTAATGTCAATACTAAAGTTGGCTTAACAT TTGCAACTGGATTAAGGTCTATATTAAGACAAGACCCTGATACCATAATGGTTGGGGAAATAAGAGATACTGAAACGGCT CAAATAGCAATAAGATCAGCTATTACAGGTCACTTAGTTTTATCAACTTTACATACTAGTGATGCTCCATCTAGTGTTTT AAGATTAGAAGATATGGGAGTTCAAAGATATTTGATTGCAAATGCTATTAAGGGAGTTATAGCTCAAAGACTTGTTAGAA AAATTTGTCCAAATTGTGGACAAACATATGAAGCTACACCATATGAAAAGGAAATATTAAATATAGATGTAAATGAAGAA GTAATACTTCGTAGAGGAAAAGGGTGTGCTTATTGTAATAATACTGGCTATGTAGGTAGAATGGGTATTTATGAAATTAT GGAAGTAACTAAGGAACATAGAGATGCTATTTTAGAAAATAAAAGTGCAGATATTCTTAAGGAAATTTCAATTAAGCATG GTATGAGAACTCTTGGACAATCATGTAGAAGTTTAGTCTTGGAGGGGAATACCACAGTTGAAGAAATGTTAAATATAACT TATGATATGTAA Protein sequence : MISYQKKRLGDILIESGKLTEDRLKEALLIQKQVGKRLGEILVEQNFVTEEDIIEVLEKQLNIERVNLEIITIDRRAIKM ISENVCRKHLIVPYEIDDNTIKVAMADPLDIVAIDDVEISTGLNVRPYIAVKQSIQRTIDIYYSNQKVLLAAEELTKASD EESNELNLDKIEEIDNLDNAPIVKMIEYVIKNAVEERASDIHIETYENILRIRYRIDGKLHTISTLPVDTLAPLVTRVKI LANLDISEKRLPQDGRILTKVGDKQIDLRVSILPMITGEKIVIRIINKENFIISKEGLGLKNFELSLLDKITKHSNGIIL VTGPTGSGKTTTLYTILNELNTESKNIITIEDPVEVSIEGINQVNVNTKVGLTFATGLRSILRQDPDTIMVGEIRDTETA QIAIRSAITGHLVLSTLHTSDAPSSVLRLEDMGVQRYLIANAIKGVIAQRLVRKICPNCGQTYEATPYEKEILNIDVNEE VILRRGKGCAYCNNTGYVGRMGIYEIMEVTKEHRDAILENKSADILKEISIKHGMRTLGQSCRSLVLEGNTTVEEMLNIT YDM |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 3e-84 | 48 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 2e-84 | 48 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| CPE2286 | NP_563202.1 | secretion system protein E | VFG2048 | Protein | 3e-85 | 48 |
| CPE2286 | NP_563202.1 | secretion system protein E | VFG1876 | Protein | 1e-83 | 45 |
| CPE2286 | NP_563202.1 | secretion system protein E | VFG0182 | Protein | 9e-89 | 45 |
