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Name : potB (CPE1969) Accession : NP_562885.1 Strain : Clostridium perfringens 13 Genome accession: NC_003366 Putative virulence/resistance : Unknown Product : spermidine/putrescine ABC transporter Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG1176 EC number : - Position : 2258208 - 2259053 bp Length : 846 bp Strand : + Note : similar to pir:H70179 spermidine/putrescine ABC transporter, permease (potB) homolog from Borrelia burgdorferi (269 aa); 46.1% identity in 204 aa overlap. N-terminal signal sequence and 6 transmembrane regions were found by PSORT.; permease DNA sequence : ATGAAAAATAGAAATAAAAATTTATCATTTGCAGCTTATCCATACGTTGTATGGAGTGCTATATTCATAGTTATCCCTTT ACTTTTAATAGTTTTCTTTAGTTTTACAAGTAAAGTTGATGGAAGATTTGTTTTCTCTTTTGAAAACTTCCAAAGATTAT TTGAGCCAATATATTTTACTGTTTTTATACGTTCTATATGGCTTGCTGTTTTATCAACAGTTTCATGTTTAATTTTAGGT TATCCAATAGCTTATATAATTTCTAAATTACCTATAAAAAGAAGAAATATGTTAATACTTTTATTCATATTACCAATGTG GATGAACTTCTTACTTAGAACATATGCGTGGATGGCTATACTTGGTAGAGATGGGCTTATTAATACTCTTTTAGGTTATA TAGGAATAGGTCCAATTAAAATGCTATATACTGACGGAGCAATCTTACTTGGAATGGTATATAACTTCTTACCATTTATG GTTATACCAATATATACTGTACTTATAAAAATTGATAAAAACTTAGTTAATGCAGCTTATGACTTAGGTGCAAATAAAGC TCAAGCTTTTAGAAAAATTATTTTACCACTTAGTATTCCTGGAATAATCTCTGGAATAACTATGGTATTTATGCCAGCTG TTTCAAACTTCGTAATCCCAAGCCTTCTAGGTGGTGGAAAATACATGTTAGTTGGTAATCTTATAGAACAACAATTTACT ACTATCGGTAACTGGAACTTCGGTTCTGCTTTATCAATCTTTATGATGATATTAATATTAATTTCAATGGCCTTTATGTC TAAATATGAAAAGAACGGAAAAGAAGGAGGTAAACAGCTATGGTAA Protein sequence : MKNRNKNLSFAAYPYVVWSAIFIVIPLLLIVFFSFTSKVDGRFVFSFENFQRLFEPIYFTVFIRSIWLAVLSTVSCLILG YPIAYIISKLPIKRRNMLILLFILPMWMNFLLRTYAWMAILGRDGLINTLLGYIGIGPIKMLYTDGAILLGMVYNFLPFM VIPIYTVLIKIDKNLVNAAYDLGANKAQAFRKIILPLSIPGIISGITMVFMPAVSNFVIPSLLGGGKYMLVGNLIEQQFT TIGNWNFGSALSIFMMILILISMAFMSKYEKNGKEGGKQLW |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| potB | BAA36746.1 | - | Not tested | LIM | Protein | 2e-36 | 45 |
