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Name : serS (CPE0014) Accession : NP_560930.2 Strain : Clostridium perfringens 13 Genome accession: NC_003366 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : 6.1.1.11 Position : 21268 - 22545 bp Length : 1278 bp Strand : + Note : catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : ATGTTAGATTTAAAAAAGTTAAGAAGTAATACTGAAGAAGTGAAAAAAGCTTTATCTAATAGAGGAGAAGACTTTGATGT AAATGTTATAGACGAAGTTATAGCTTTAGATGAAGAAAGAAGAAAAATTTTAGTTGATGTTGAGGCTTTAAAGAAACAAA GAAATGAAGTATCAGCTGAAATTCCAAAGAGAAAAAAAGCTGGAGAAGACGTTACAGAAGTAATGGCTGAAATGAGAGAA ATAGGAGATAAAATAAAGGCTGATGATGCTAAAGTTGCTGAGTTAAACGATAAAATTAACTATATCATGCTAAGAATTCC TAATATACCAAACCCAGCTGTTCCAGAAGGGGAAACTGATGAGGACAATGTTGAAATAAAAAGATGGGGAGAACCTACTA AATTCAACTTTGAACCAAAAGCACACTGGGATTTAGGAACAGATTTAGATCTTTTAGACTTCGAAAGAGGTGGAAAGGTT GCTGGATCAAGATTTACAGTTTACAAAGGAATGGGTGCTAGATTAGAGAGATCTATAATAAACTACTTCTTAGATAAACA CACATTTGAAAATGGATACACTGAAGTATTACCACCATACATGGTAAATAGAGATAGTATGACTGGTACTGGTCAACTTC CAAAATTCGAAGAAGATGCTTTCAAAGTAGAAAACAATGGATATTTCTTAATACCAACAGCTGAGGTTCCTGTAACTAAT ATGTACAGAAATGAAACTTTAGAGGGAGATAAACTTCCAATAAAACATGCTGCATATAGTGCTTGTTTTAGAGCGGAAGC TGGTTCAGCAGGAAGAGATACAAGAGGTCTTATAAGACAACACCAATTTAATAAAGTTGAGTTAGTTAAGTTCTGTAAAC CTGAGCAAAGCTATGAAGAATTAGATAAATTAGTTCAAGATGCTGAATCTGTATTACAAGGTTTAGGATTACCATATAGA ATAGTTAGAATATGTAAAGGTGATTTAGGATTCACTGCTGCATTAAAATATGATATAGAAGTTTGGATGCCAAGCTACAA TAGATATGTTGAAATTTCAAGTTGTTCAAACTTTGAAGATTTCCAAGCTAGAAGAGCTAACATTAAATATAAAAATTCTC CAAAGGAAAAACCACAATTTGTTCATACATTAAATGGATCAGGGGTTGCTATTGGAAGAACTGTAGCTGCTATATTAGAA AACTATCAACAAGAAGATGGATCAGTAGTTATACCAGAAGCTTTAAAAGAATATATGAGATGTGATTTACTAAAATAA Protein sequence : MLDLKKLRSNTEEVKKALSNRGEDFDVNVIDEVIALDEERRKILVDVEALKKQRNEVSAEIPKRKKAGEDVTEVMAEMRE IGDKIKADDAKVAELNDKINYIMLRIPNIPNPAVPEGETDEDNVEIKRWGEPTKFNFEPKAHWDLGTDLDLLDFERGGKV AGSRFTVYKGMGARLERSIINYFLDKHTFENGYTEVLPPYMVNRDSMTGTGQLPKFEEDAFKVENNGYFLIPTAEVPVTN MYRNETLEGDKLPIKHAAYSACFRAEAGSAGRDTRGLIRQHQFNKVELVKFCKPEQSYEELDKLVQDAESVLQGLGLPYR IVRICKGDLGFTAALKYDIEVWMPSYNRYVEISSCSNFEDFQARRANIKYKNSPKEKPQFVHTLNGSGVAIGRTVAAILE NYQQEDGSVVIPEALKEYMRCDLLK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 1e-120 | 58 |
