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Name : clpB (CPE1428) Accession : NP_562344.1 Strain : Clostridium perfringens 13 Genome accession: NC_003366 Putative virulence/resistance : Virulence Product : clpB protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 1681198 - 1683798 bp Length : 2601 bp Strand : - Note : similar to pir:S76197 endopeptidase Clp ATP-binding chain B1 from Synechocystis sp. (strain PCC 6803) (867 aa); 55.8% identity in 577 aa overlap DNA sequence : ATGAATGCAGATAAAATGACATTAAGAGTACAACAAAGCTTAAATGATGCTTATGAAATAGCAGTTAAATATAATAATCA ACAATTAGATATAATTCACTTATTTTCAGCATTAGTAAATCAAAAAGATGGTTTAATTCCTAATATATTTGAAAAAATGG GTGTTAATATAGATTCATTAAAAAGAGACATTCATGTTCAAATAGATAGAATGCCTAAGGTTTTAGGAGAAGCGGCACAA TCATCAGGGGTTACTGCTACAAGAAGAATAAATGAAGTATTAATAAAGGCAGAAGAAATTTCAAAACAATTTGAAGATTC ATATATAAGTGTTGAGCATGTAATGCTTGCAATGATAGATATAGATAAAAATGGAGCTGTAGGAGAAATCTTAAGAAAAA ATAACATAACTAAAGATGGATTCCTAAAGGTTTTAAATGAAGTTAGAGGAAGTCAAAGAGTGGATTCACAAGATCCAGAA GGAACTTATGAAGCTTTAGATAAATACGGTACTAATTTAATAGAACTTGTAAAACAACATAAATTAGATCCTGTTATAGG AAGAGATGAAGAAATAAGAAGAGCTGTTAGAATTCTTTCAAGAAAAACTAAGAACAATCCAATACTAATAGGAGAACCTG GAGTTGGTAAAACTGCTATAGTTGAAGGATTAGCAGAAAGAATTGTAAGAGGAGATGTGCCAGAAGGACTAAAGGATAAG GTAATTATCTCATTAGATATGGGTGCATTAATAGCTGGTGCTAAATACAGAGGAGAATTTGAAGAAAGATTAAAAGCTGT TTTAAAAGAAGTTCAAAGTTCAGAAGGAAAAATACTTTTATTCATAGATGAAATTCATACAATTGTAGGCGCTGGTAAAA CAGATGGTGCAATGGATGCAGGAAACTTAATTAAACCAATGCTTGCAAGAGGAGAACTTCACTGCATAGGAGCCACAACT TTTGACGAATATAGACAATATATAGAAAAGGATAAAGCTCTAGAGAGAAGATTCCAACCTGTAATAGTTGAAGAACCAAC AGTTGAAGAAACTGTATCTATTTTAAGAGGATTAAAAGAAAGATTTGAAATTCACCATGGAATTAGAATCCATGACTCAG CAATAGTAGCTGCTGCAAAACTTTCTCATAGATATATTCAAGATAGATATTTACCAGATAAGGCTATAGATTTAATAGAT GAAGCTGGTGCTATGATAAGAAGTGAAATAGATTCTCTTCCAACTGAATTAGATATTATAAGAAGAAAGATCTTAATGCT TGAAACTGAAAAGGAAGCTTTATCAAAAGAAAATGATGATGCATCTAAGGAAAGATTAGTTGCCTTAGAAAAAGAGCTTG CAGAGCTTCAAGATAAAAATGATGAGATGACAATTAAATATGAAAAAGAAAAATCTCATATTTCAGCAGTTAGGGACTTA AAGGCTGAATTAGATGAAGCAAGAGGATTAGCTGAAAAATATGAAAGAGAATATGATTTAAATAAAGTTGCAGAACTTAA ATATGGAAAAATTCCAGAGCTTGAACGTAAAATAAAAGAACAAGAAGCAAGTATGGAAAAAGATAATGAAAATGCTTTAT TAAAAGAAGAGGTTACTGAAAATGAAATTTCAGAAATAATCTCAAAATGGACTGGAATTCCTGTTACAAAACTAGTTGAA AGTGAAAGAGAAAAACTTTTAAGACTAGAAGAAGAATTAAGAGAAAGAGTAATAGGTCAAGATGAGGCTACAACTGCAGT TGCTAATGCTGTAATAAGAGCAAGAGCAGGTCTTAAAGATGAAAGAAAACCAATAGGATCATTTATATTCTTAGGACCTA CTGGAGTTGGTAAAACAGAACTTGCAAAAACTTTAGCTAGAAATTTATTTGATAGTGAAGACAATATAGTAAGAATAGAT ATGTCTGAATATATGGAAAAACATGCAGTATCTAGATTAATAGGACCTCCTCCAGGATATGTAGGATATGAAGAAGGGGG ACAATTAACAGAGGCTGTTAGAAGAAACCCATATTCAGTAATATTATTTGATGAAATAGAAAAAGCACATGATGATGTAT TTAACTTATTCCTTCAAATATTAGATGATGGTAGATTAACAGATAATAAAGGTAAAACTGTTGATTTCAAAAACACTATA ATAATTATGACTTCTAATATAGGTAGTGGATACTTATTAGAAAATAAATCTGGTGAAGGTATAGAAGATGATATTAGAGA AAATGTTATGAATGAAATGAAGTTAAGATTCAAACCAGAATTCTTAAACAGAGTAGATGATATCATAATGTTTAGACCTT TAAGCAGTGAAGGAATTAAGAAAATAATAGATATCTTCTTAAGAGATGTTGAAAATAGATTAAGAGAAAGAAATATAACT CTTGAAGTTACTGATAGAGCTAAGGAAATATTAGCTGAAGAAGGATATGATCCAGTATATGGAGCTAGACCATTAAAGAG ATATATAAGTAATGTCTTAGAAACTGAAATAGCTAAGAAGATAATTGCAGGAGAAATTTATGATGGATCTGTTGCTTTAA TAGATGGAGTAGATGGAAAAATTATAGTTTCTAGAAAATAA Protein sequence : MNADKMTLRVQQSLNDAYEIAVKYNNQQLDIIHLFSALVNQKDGLIPNIFEKMGVNIDSLKRDIHVQIDRMPKVLGEAAQ SSGVTATRRINEVLIKAEEISKQFEDSYISVEHVMLAMIDIDKNGAVGEILRKNNITKDGFLKVLNEVRGSQRVDSQDPE GTYEALDKYGTNLIELVKQHKLDPVIGRDEEIRRAVRILSRKTKNNPILIGEPGVGKTAIVEGLAERIVRGDVPEGLKDK VIISLDMGALIAGAKYRGEFEERLKAVLKEVQSSEGKILLFIDEIHTIVGAGKTDGAMDAGNLIKPMLARGELHCIGATT FDEYRQYIEKDKALERRFQPVIVEEPTVEETVSILRGLKERFEIHHGIRIHDSAIVAAAKLSHRYIQDRYLPDKAIDLID EAGAMIRSEIDSLPTELDIIRRKILMLETEKEALSKENDDASKERLVALEKELAELQDKNDEMTIKYEKEKSHISAVRDL KAELDEARGLAEKYEREYDLNKVAELKYGKIPELERKIKEQEASMEKDNENALLKEEVTENEISEIISKWTGIPVTKLVE SEREKLLRLEEELRERVIGQDEATTAVANAVIRARAGLKDERKPIGSFIFLGPTGVGKTELAKTLARNLFDSEDNIVRID MSEYMEKHAVSRLIGPPPGYVGYEEGGQLTEAVRRNPYSVILFDEIEKAHDDVFNLFLQILDDGRLTDNKGKTVDFKNTI IIMTSNIGSGYLLENKSGEGIEDDIRENVMNEMKLRFKPEFLNRVDDIIMFRPLSSEGIKKIIDIFLRDVENRLRERNIT LEVTDRAKEILAEEGYDPVYGARPLKRYISNVLETEIAKKIIAGEIYDGSVALIDGVDGKIIVSRK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 1e-96 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | NP_562344.1 | clpB protein | VFG2076 | Protein | 1e-92 | 41 |
| clpB | NP_562344.1 | clpB protein | VFG2084 | Protein | 8e-92 | 41 |
