Gene Information

Name : CPE0122 (CPE0122)
Accession : NP_561038.1
Strain : Clostridium perfringens 13
Genome accession: NC_003366
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 161923 - 162693 bp
Length : 771 bp
Strand : +
Note : similar to gpu:AP001508_9 ABC transporter (ATP-binding protein) from Bacillus halodurans (259 aa); 52% identity in 252 aa overlap; ATP-binding protein

DNA sequence : 
ATGGGTAAAGAGGTTTTAAAGGTAAGTAATATAGAAAAGTATTATGGTAAAAAAGGAAATGTTACAAAGGCAATTAATGA
TATTAGTTTTACTGTTTCAGAAGGTGAGTTTGTTGGAATAATGGGTGCTTCAGGAAGTGGTAAAACAACACTTTTAAATT
GTATATCAACCATAGATAAGGTAACTAGTGGTCATATATATTTAGAAGGAGAGGATGTTACAAGTTTTAGTTCAAAAAAG
TTAGCTAAGTTTAGAAGAGAAAAAATAGGGTTTATATTTCAGGATTTTAATCTTTTAGATACCTTAACAGCTTACGAAAA
TATAGCCTTAGCTCTTACAATTCAAAGAGTGAATAACAAGGAAATAGATAAAAGAGTAAGACTCGTTGCAGAAGCTTTAA
ATATAAGTAATGAGCTTAATAAATATCCTTATGAAATGTCAGGGGGACAAAAGCAGAGGGTAGCATCAGCAAGGGCAATA
GTTACTAATCCATCTTTAGTATTAGCTGATGAACCAACAGGAGCCTTAGATTCAAAGGCAGCTACCATGCTTCTTGAAAG
CTTAGAAGATTTAAATAAGAATTTAAATGCAACAATTATGATGGTAACTCATGATGCTTTTACGGCAAGTTATGCAAATA
GAATTTTATTTATTAAGGATGGAAAGATATTTAATGAACTTATAAAAGGAACTGATTCTAGAAAAGAATTTTTCAATAGA
ATAATTGAAGTCATAACTCTTCTTGGAGGTGACAGTAATAATGTATTTTAA

Protein sequence : 
MGKEVLKVSNIEKYYGKKGNVTKAINDISFTVSEGEFVGIMGASGSGKTTLLNCISTIDKVTSGHIYLEGEDVTSFSSKK
LAKFRREKIGFIFQDFNLLDTLTAYENIALALTIQRVNNKEIDKRVRLVAEALNISNELNKYPYEMSGGQKQRVASARAI
VTNPSLVLADEPTGALDSKAATMLLESLEDLNKNLNATIMMVTHDAFTASYANRILFIKDGKIFNELIKGTDSRKEFFNR
IIEVITLLGGDSNNVF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 8e-26 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CPE0122 NP_561038.1 ABC transporter NC_012469.1.7686878. Protein 2e-42 46
CPE0122 NP_561038.1 ABC transporter CP001581.1.gene598.p Protein 1e-40 42
CPE0122 NP_561038.1 ABC transporter CP001581.1.gene798.p Protein 7e-36 42
CPE0122 NP_561038.1 ABC transporter NC_008702.1.4606598. Protein 4e-34 41