|
Name : smpB (CPE1295) Accession : NP_562211.1 Strain : Clostridium perfringens 13 Genome accession: NC_003366 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 1529901 - 1530371 bp Length : 471 bp Strand : - Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGGCAAAGAGAAAAGACAATAAGACATTAGCAGAGAATAGGAAAGCTAGACATGATTACTTTGTTGATGAAGCTATGGA AGCAGGTATAGCTTTAGTTGGAACAGAGGTTAAGTCTATTAGAAACGGAAGAGTTAACTTAAAGGATTGTTATGCAGATA TAAATAATGGAGAGATATTTATAAATAATATGCATATAAGTCCTTATGAGCAAGGAAACATATTTAATGTTGATCCTTTA AGAAAAAGAAAATTACTTCTTCATAAAAGTGAAATTCAAAGATTAATAGGAATAGTTCAACAACAAGGGGTTGCTTTAAT ACCACTTTCTTTATATTTAAAGAATGGAAGAGTTAAGGTTAACTTAGGGGTTTGTAGAGGTAAGAAAAACTACGACAAGA GAGATACAATGCTTGAAAAGGCTCATAAGAGAGAGATGGATAGACAACTTAAGGAAAGAAATAGATATTAG Protein sequence : MAKRKDNKTLAENRKARHDYFVDEAMEAGIALVGTEVKSIRNGRVNLKDCYADINNGEIFINNMHISPYEQGNIFNVDPL RKRKLLLHKSEIQRLIGIVQQQGVALIPLSLYLKNGRVKVNLGVCRGKKNYDKRDTMLEKAHKREMDRQLKERNRY |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 3e-40 | 62 |
| smpB | YP_001800894.1 | SsrA-binding protein | Not tested | Not named | Protein | 4e-30 | 47 |
| smpB | NP_230495.1 | SsrA-binding protein | Not tested | VPI-1 | Protein | 6e-30 | 44 |
