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Name : gspE (CCA00947) Accession : NP_829808.1 Strain : Chlamydophila caviae GPIC Genome accession: NC_003361 Putative virulence/resistance : Virulence Product : general secretion pathway protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 1096258 - 1097751 bp Length : 1494 bp Strand : - Note : similar to GB:L05176, SP:Q02540, and PID:151181; identified by sequence similarity DNA sequence : ATGGGCGATAAGGTTGTGCTATCTCAGGAGCTATTGAATGCTCTTCCCTATTCTTTTTTAAAGAAGCACTGCCTTCTGCC GTTAAAAGAGCAGGAAGACAGTGTGACGATAGCTTATGCAAAGACCTCCTCACTCATGGCAAAAGACGAAGTGCAGCTGC TTATAAAAAAGCCTGTGCTTTTTGTTCTTAAAGACGAAACAGAGATTATACAGAGTTTACAAAAGATTTACTCGAATTTA GAGGGGAGGGCCTCCGACATGCTGTTAAGCATGAAAGAAGGCGATACCTCGCCAATAAATGAAGAGGAAGATCTTTTAGA AAGTACTGACCTTGTTCCCGTTGTACGCTTTTTAAATCTGATTTTGAAAGAAGCAATTGAAGAACGTACCTCAGATATTC ATTTTGAACCTTTAGAAGACTCTCTACGCATACGCTACCGTATAGACGGCGTTTTGCATGATCGTCATTCTCCACCAGCC CATCTGCATTCAGCATTAATCACTCGGATTAAAGTATTGGCAAAAATGGATATAGCGGAACACCGCTTGCCTCAAGATGG GAGAATAAAAATCCAAATAGGTGGTCAGGAAATCGATATGCGTGTGAGTACCGTTCCTGTAATCTATGGTGAACGTGTTG TTCTTAGGATTTTAGATAAGCGTAATGTGATTTTAGATATCTCGGGATTGCACATGCCTAAAGATATCGAAAGTTCTTTT AAAGAAGTGATTGCTGTTCCTGAAGGGATACTTTTAGTTACAGGCCCTACGGGGAGTGGGAAAACAACAACGCTCTATAG TGTGATCCAACATCTTTCAGGACCTTTTACCAATATCATGACAATAGAAGATCCCCCTGAATATAAGTTATCAGGAATAG CGCAAATTGCTGTGAAACCAAAGATAGGTCTATCGTTTGCTTGTGGTTTAAGACATTTATTGCGTCAGGATCCCGATGTT TTAATGGTTGGAGAGATTCGTGATCAAGAAACGGCGGAAATTGCTATACAAGCCGCGCTAACAGGGCACCTTGTTGTCAG CACATTGCACACTAATGATGCGATTTCTGCAATTCCCCGTCTTTTAGATATGGGAGTAGAGCCTTATTTATTATCAGCAA CAATCGTTGGTGTTGTTGCTCAGAGATTAGTGAGAAAAATCTGCCCTCATTGCAAGCAGCAATGCGCAGCAGATGTCCAA GAACGGGCATTTCTACAGTCTATAGGACAAGATCCGGATATCCCCTTATATCGCGGAGAGGGGTGTTCTCACTGTTTCCG ATCAGGATATAAAGGACGTCAGGGAATTTATGAATTTCTACATCCCGATACAGCGTTGCGTTCTGAAATCGCTATGCATA AACCTTATCATGTATTGCGAGAGCATGCTGAGAAGAAGGGATTTCATCCATTACTAAGACATGGAGTTGCTTTAGCGTTG TCGGGAGAGACAACGCTGTCAGAAGTATTCCGTGTTACGAAACGGAATGACTAG Protein sequence : MGDKVVLSQELLNALPYSFLKKHCLLPLKEQEDSVTIAYAKTSSLMAKDEVQLLIKKPVLFVLKDETEIIQSLQKIYSNL EGRASDMLLSMKEGDTSPINEEEDLLESTDLVPVVRFLNLILKEAIEERTSDIHFEPLEDSLRIRYRIDGVLHDRHSPPA HLHSALITRIKVLAKMDIAEHRLPQDGRIKIQIGGQEIDMRVSTVPVIYGERVVLRILDKRNVILDISGLHMPKDIESSF KEVIAVPEGILLVTGPTGSGKTTTLYSVIQHLSGPFTNIMTIEDPPEYKLSGIAQIAVKPKIGLSFACGLRHLLRQDPDV LMVGEIRDQETAEIAIQAALTGHLVVSTLHTNDAISAIPRLLDMGVEPYLLSATIVGVVAQRLVRKICPHCKQQCAADVQ ERAFLQSIGQDPDIPLYRGEGCSHCFRSGYKGRQGIYEFLHPDTALRSEIAMHKPYHVLREHAEKKGFHPLLRHGVALAL SGETTLSEVFRVTKRND |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 7e-98 | 45 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 5e-98 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| gspE | NP_829808.1 | general secretion pathway protein E | VFG0182 | Protein | 1e-92 | 52 |
| gspE | NP_829808.1 | general secretion pathway protein E | VFG1876 | Protein | 3e-93 | 46 |
| gspE | NP_829808.1 | general secretion pathway protein E | VFG2048 | Protein | 1e-98 | 46 |
| gspE | NP_829808.1 | general secretion pathway protein E | VFG2426 | Protein | 3e-73 | 45 |
| gspE | NP_829808.1 | general secretion pathway protein E | VFG1880 | Protein | 5e-76 | 44 |
| gspE | NP_829808.1 | general secretion pathway protein E | VFG0112 | Protein | 8e-84 | 41 |
