Gene Information

Name : sctR (CCA00938)
Accession : NP_829799.1
Strain : Chlamydophila caviae GPIC
Genome accession: NC_003361
Putative virulence/resistance : Virulence
Product : type III secretion system protein
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 1089967 - 1090878 bp
Length : 912 bp
Strand : +
Note : similar to GB:X05302; identified by sequence similarity

DNA sequence : 
ATGCGTTCCATTTTTCGTACTTTCCTTTGTATGTTTATCTTGAGCGCACCGTCATGTTTTGCAGATGCTTACGATTCATC
CTGTTCTTCTCGCTGTAACCCCCCTCAATCTACAGAACTGTCGGCAATTGCTCAACCACCTGAGGTCAAGAAAACCTATC
CTCAACCGGCTTTCCGAGAGAGGGTAACTGCTAATGATGTGCTTCCTCAAGAGCATCTTTCCGCAGGAAGTTTTTCAGAT
ACGTATCCGGATCTAACAACACAAGCAATTATCTTAATTTTCCTAGCGTTATCGCCTTTCCTGGTGATGTTGCTAACATC
GTACTTAAAAATTATCATTACTCTCGTTCTGTTAAGGAACGCTCTGGGAGTTCAGCAGACACCTCCCAGCCAGGTCCTTA
ACGGCATAGCATTGATTCTTTCTATTTATGTGATGTTCCCTACGGGAGTTGCTATGTACAACGACGCGAGGAAAGAGATA
CAAGGAAATGCCATTCCTAGAGATTTATTCTCCGCAGAAGGAGCGGAAACTGTTTTCGTAGCATTGAATAAATCTAAAGA
ACCTTTGCGATCCTTCTTAATACGCAATACGCCAAAAGCTCAGATCCAAAGTTTCTATAAGATTTCTCAAAAAACATTTC
CCCAAGAGATCCGTGAGCATATGACAGCTTCGGATTTCGTGATTATTATTCCTGCTTTTATTATGGGGCAGATTAAAAAT
GCTTTTGAAATTGGCGTTCTAATTTATCTACCGTTTTTTGTGATCGACCTAGTCACAGCAAACGTTTTAGTAGCTATGCA
AATGATGATGCTTTCTCCATTATCTATTTCGCTACCCTTAAAATTACTTCTTGTTGTGATGGTGGATGGTTGGACGTTAT
TACTTCAAGGTCTCATGATTAGCTTTAAATAG

Protein sequence : 
MRSIFRTFLCMFILSAPSCFADAYDSSCSSRCNPPQSTELSAIAQPPEVKKTYPQPAFRERVTANDVLPQEHLSAGSFSD
TYPDLTTQAIILIFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTGVAMYNDARKEI
QGNAIPRDLFSAEGAETVFVALNKSKEPLRSFLIRNTPKAQIQSFYKISQKTFPQEIREHMTASDFVIIIPAFIMGQIKN
AFEIGVLIYLPFFVIDLVTANVLVAMQMMMLSPLSISLPLKLLLVVMVDGWTLLLQGLMISFK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 2e-25 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sctR NP_829799.1 type III secretion system protein VFG2131 Protein 9e-95 78
sctR NP_829799.1 type III secretion system protein VFG2016 Protein 4e-23 43
sctR NP_829799.1 type III secretion system protein VFG1259 Protein 1e-22 43