|
Name : serS (CCA00897) Accession : NP_829759.1 Strain : Chlamydophila caviae GPIC Genome accession: NC_003361 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : 6.1.1.11 Position : 1037600 - 1038880 bp Length : 1281 bp Strand : + Note : catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : ATGTTGGATATAAAATTAATACGCAAGGCACCCGAAGAATGTGAAATCCGTCTTCGTAAGAAAGATCCCAATATTTCCCT TCTCCCTATTCTTGATTTGGATAAAGAAGTCCGCAGATTAAAAACCGACTCGGAATCTCTACAATCTCAAAGAAAACTTT TATCTACACAAATCCATAAAGCTAAAGCTCAAGGTGAAGACGCCTCTAATATGATTAGTGAAGTGGAGAGGATCTCCCAA GATCTAGAGAAATTAGAAGCTTCACTAGAGGAAAAGAACGCAACTTTACAAGACCTTCTTGTACGCCTTCCTAATTACCC TGAAGAAGATGTGCCCGTATGTCCTGACAAATCAGGAAATCAGGTAATTAAAAGTGTAGGTGCTTTACCAACATTTTCTT TTACTCCTAAACATCACGTAGAGCTTAATCAAAAATTACAAATTTTAGATTTTAAACTTCCTGCAAAAACTTCGGGATCT GGATGGCCTGCCTATAAAAATCAGGGAGTGATGTTAGAATGGGCATTGCTCACTTATTTATTAAATAAGCAACGGGAGCA TGGCTTTCAATTATGGTTACCCCCCCTTCTTGTAAAACGTGAAATTCTTTTCGGCTCTGGACAAATTCCTAAATTTGACG GTCAATACTATTGCGTAGAAGATGGAGACCAATCTCTTTACCTGATTCCCACTGCTGAGGTTGTTCTCAACGGATTCCAT TCTCAAGAAATTTTTAACGAAAAAGATCTCCCTATATATTATGCAGCCTGCACACCCTGTTTCCGCCGAGAAGCAGGCGC CGCGGGGGCTAACGAACGCGGTCTTGTTCGTGTACATCAGTTCAATAAAGTGGAGATGTTTGCCTTCACCACGCCAGAAC AAGCGGATCAGGCTTATGAAAAGATGCTCGCTGTTGTTGAAGACATTCTTACGGAATTAAAACTCCCCTACCGTCTCTCT TTACTCTCTACAGGGGATATGTCCTTCACAGCATCAAAAACTATAGATGCTGAAGTGTGGCTGCCTGGGCAACAATCGTA TTATGAAGTTTCTTCTATTTCGCAGTGCACAGATTTCCAATCACGCCGTTCAGAAACTCGTTATAAAGATAGCCAAGGGA AAATGCATTTTATTCATACCCTTAATGGTTCAGGTTTAGCAACACCACGTTTATTCGTTGCTATTTTAGAAAATAATCAA CAAAAAGACGGCTCTGTAGTTATTCCTGAAGTTCTACGCCCTTACTTAGGAAATCAGGAAGTATTACTACCTCAAGAATG A Protein sequence : MLDIKLIRKAPEECEIRLRKKDPNISLLPILDLDKEVRRLKTDSESLQSQRKLLSTQIHKAKAQGEDASNMISEVERISQ DLEKLEASLEEKNATLQDLLVRLPNYPEEDVPVCPDKSGNQVIKSVGALPTFSFTPKHHVELNQKLQILDFKLPAKTSGS GWPAYKNQGVMLEWALLTYLLNKQREHGFQLWLPPLLVKREILFGSGQIPKFDGQYYCVEDGDQSLYLIPTAEVVLNGFH SQEIFNEKDLPIYYAACTPCFRREAGAAGANERGLVRVHQFNKVEMFAFTTPEQADQAYEKMLAVVEDILTELKLPYRLS LLSTGDMSFTASKTIDAEVWLPGQQSYYEVSSISQCTDFQSRRSETRYKDSQGKMHFIHTLNGSGLATPRLFVAILENNQ QKDGSVVIPEVLRPYLGNQEVLLPQE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 4e-77 | 43 |
