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Name : kdsB (CCA00596) Accession : NP_829460.1 Strain : Chlamydophila caviae GPIC Genome accession: NC_003361 Putative virulence/resistance : Virulence Product : 3-deoxy-manno-octulosonate cytidylyltransferase Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1212 EC number : 2.7.7.38 Position : 676068 - 676832 bp Length : 765 bp Strand : + Note : CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS DNA sequence : ATGAAAAAGCAAGTATTTGCTAGTAAAAAGGTTGGAGTTCTACCAGCACGATGGGGCAGCGCAAGATTTACTGGGAAGCC CTTAGCAAGCATTCTCGGAAAATCTTTAATACGAAGGACTTATGAGAATATCAATCAAAGCATCGCATTAGATAAAGTCA TTGTAGCTACTGATGATCAACGTATTATGGATCATGTTCTAGACTTCGGCGGCGATTGCGTGCTGACAAGTCCTGAATGC GCTAATGGAACAGAGCGCACAGCAGAAACCATATCTCGTTACTTCCCTGAAGCTGAGATTATAGTAAATATTCAGGGAGA TGAGCCCTGCTTACAGCACACCGTTGTTGATGCCCTTGTGAGAAAACTAGAAGAATTTCCTGAAATTCAAATAGTTACTC CAGTGGCTAAAACTACAGATTCTCATGAGATCTTAACAAATCAAAAAGTGAAATGTGTTTTCGATAAAAACGGAAAGGCT TTATATTTTAGCAGGAGCCCTATTCCACACATCTTAAAAAAAGAGACACCGATTTATCTTCATATTGGCGTATATGCATT TAGAAGGAATGCCCTATTCAATTACATTGAATCTTCCCCTACACCATTAAGCCAAGCTGAAGATCTGGAGCAACTGCGTA TACTAGAACACGGTGGATCTATTCATGTGTGTGTCGTGGAAGCTAAGAGCCCCTCAGTTGATTATCCTGAAGATATAAAC AAGGTGGAAAAATACTTAACATGCCATTCAAGTGCATCTTTTTAA Protein sequence : MKKQVFASKKVGVLPARWGSARFTGKPLASILGKSLIRRTYENINQSIALDKVIVATDDQRIMDHVLDFGGDCVLTSPEC ANGTERTAETISRYFPEAEIIVNIQGDEPCLQHTVVDALVRKLEEFPEIQIVTPVAKTTDSHEILTNQKVKCVFDKNGKA LYFSRSPIPHILKKETPIYLHIGVYAFRRNALFNYIESSPTPLSQAEDLEQLRILEHGGSIHVCVVEAKSPSVDYPEDIN KVEKYLTCHSSASF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| kpsU | YP_854332.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | Not tested | PAI I APEC-O1 | Protein | 3e-34 | 41 |
| kpsU | AAZ04469.1 | CMP-KDO synthetase | Virulence | PAI I APEC-O1 | Protein | 2e-34 | 41 |
