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Name : sctV (CCA00459) Accession : NP_829327.1 Strain : Chlamydophila caviae GPIC Genome accession: NC_003361 Putative virulence/resistance : Virulence Product : type III secretion inner membrane protein SctV Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4789 EC number : - Position : 517743 - 519872 bp Length : 2130 bp Strand : - Note : similar to GB:L27528, SP:P38098, PID:440837, PID:451651, and PID:1750385; identified by sequence similarity DNA sequence : ATGAACAAGTTACTCAATTTTGTCAGTAGAACCTTTGGGGGAGAAGCAGCCCTAAACATGATCAATAAATCGAGTGACCT CATCCTGGCTCTATGGATGATAGGCGTCGTTTTAATGATCATCTTGCCCCTGCCTCCGACTATTGTCGACTTGATGATCA CTATCAACTTGGCGGTGTCTGTCTTCCTATTGATGGTGGCTTTGTATATCCCTAGCGCTCTACAATTATCGGTTTTCCCC TCTCTACTTCTAATTACAACAATGTTTCGTTTGGGAATTAACATTTCCTCATCGAGACAGATTCTCCTTAAAGCATATGC TGGACACGTCATTCAAGCCTTCGGAGACTTTGTTGTTGGAGGGAACTACGTTGTTGGATTTATTATCTTCTTAATCATTA CGATTATTCAGTTTATCGTTGTTACCAAAGGTGCTGAGCGTGTTGCCGAGGTTGCTGCGAGATTCCGATTAGATGCTATG CCTGGTAAGCAGATGGCTATTGACGCCGATTTGCGCGCAGGAATGATTGATGCTCAACAAGCTCGTGATAAACGAGGAAT GATTCAGAAGGAAAGTGAGCTTTATGGAGCCATGGACGGTGCTATGAAGTTCATTAAAGGGGACGTTATCGCTGGTATCG TTATCTCTTTAATTAACATCGTTGGTGGTTTGACCATTGGTGTCGCCATGCACGGTATGGACCTTGCTCAAGCTGCACAC GTCTACACTCTTTTATCTATCGGTGATGGATTAGTCTCTCAGATTCCTTCACTACTTATCTCTTTAACTGCTGGTATCGT GACTACTCGAGTTTCTAGTGACAAAAACACGAACTTGGGTAAAGAGATTTCTTCTCAATTAGTTAAAGAACCTAGAGCGT TGCTCCTCGCTGGCGCAGCAACTTTAGGTGTGGGCTTCTTTAAAGGCTTCCCACTTTGGTCATTCTCCATTCTCGCTTTC ATCTTCGGCCTGCTTGGAGTTATCCTTCTTGCTAAGAAAAATAACGCCTCTAAAAAAGGTGCATCGGGAGCAACAACAAC GGTGGGGGCTGCTGCCGATGGAGCAGCAACAGCTGGCGACAATCCAGACGATTATGCGCTAACCCTCCCTGTCATTTTAG AGTTAGGAAAAGATCTATCTAAGTTAATTCAACAGAGAACAAAATCTGGTCAAAGCTTCATTGATGATATGATCCCTAAA ATGCGTCAGGCTTTGTATCAAGATATCGGTATCCGTTATCCAGGAATTCACGTACGTACTGATTCTCCTTCATTAGAAGG GTACGACTACATGATCCTTCTTAATGAAGTTCCTTATGTTCGAGGTAAGGTACCTCCAAATCACGTATTGACTAATGAAG TAGAAGAGAATCTTAAAAGATATAACCTCCCCTTCATTACCTATAAAAATGCTGCGGGACTACCTTCAGCTTGGGTTAGT GAAGATGCTAAAACCATTCTCGAAAAAGCAGCTATTAAATACTGGACACCTTTAGAAGTAATTATTCTTCATCTTTCGTA CTTCTTCCATAGAAGCTCTCAAGAGTTCTTGGGAATTCAAGAAGTGCGCTCTATGATTGAATTTATGGAACGTTCCTTCC CTGATCTCGTTAAGGAAGTTACCCGCCTTATTCCTCTACAAAAACTTACAGAGATTTTCAAACGTCTAGTCCAAGAGCAA ATCTCTATTAAGGATTTGCGCACGATTTTAGAATCATTAAGTGAATGGGCTCAGACAGAAAAAGATACCGTATTACTTAC TGAATACGTACGTTCTTCTCTTAAACTCTATATTAGCTTTAAATTTTCTCAGGGCCAATCTGCAATTTCTGTCTATTTAT TAGATCCAGAAATTGAAGAAATGATCCGTGGAGCAATTAAGCAAACTTCTGCGGGATCTTATCTTGCCTTGGATCCTGAT TCTGTAAATCTCATCTTAAAATCTATGAGAAATACAATTACGCCAACACCTCCTGGAGGTCAGCCTCCTGTGCTGTTGAC AGCAATTGACGTAAGACGATATGTAAGGAAATTAATAGAGACAGAATTCCCTGATATCGCTGTGATTTCTTATCAAGAGA TTCTCCCAGAGATTCGCATCCAGCCATTAGGAAGAATTCAGATTTTCTAA Protein sequence : MNKLLNFVSRTFGGEAALNMINKSSDLILALWMIGVVLMIILPLPPTIVDLMITINLAVSVFLLMVALYIPSALQLSVFP SLLLITTMFRLGINISSSRQILLKAYAGHVIQAFGDFVVGGNYVVGFIIFLIITIIQFIVVTKGAERVAEVAARFRLDAM PGKQMAIDADLRAGMIDAQQARDKRGMIQKESELYGAMDGAMKFIKGDVIAGIVISLINIVGGLTIGVAMHGMDLAQAAH VYTLLSIGDGLVSQIPSLLISLTAGIVTTRVSSDKNTNLGKEISSQLVKEPRALLLAGAATLGVGFFKGFPLWSFSILAF IFGLLGVILLAKKNNASKKGASGATTTVGAAADGAATAGDNPDDYALTLPVILELGKDLSKLIQQRTKSGQSFIDDMIPK MRQALYQDIGIRYPGIHVRTDSPSLEGYDYMILLNEVPYVRGKVPPNHVLTNEVEENLKRYNLPFITYKNAAGLPSAWVS EDAKTILEKAAIKYWTPLEVIILHLSYFFHRSSQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQ ISIKDLRTILESLSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAGSYLALDPD SVNLILKSMRNTITPTPPGGQPPVLLTAIDVRRYVRKLIETEFPDIAVISYQEILPEIRIQPLGRIQIF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lssD | AAO18050.1 | LssD | Virulence | TTSS locus | Protein | 2e-137 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| sctV | NP_829327.1 | type III secretion inner membrane protein SctV | VFG2126 | Protein | 0.0 | 92 |
| sctV | NP_829327.1 | type III secretion inner membrane protein SctV | VFG0064 | Protein | 2e-139 | 46 |
| sctV | NP_829327.1 | type III secretion inner membrane protein SctV | VFG0384 | Protein | 6e-136 | 46 |
