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Name : clpC (CCA00355) Accession : NP_829225.1 Strain : Chlamydophila caviae GPIC Genome accession: NC_003361 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease, ATP-binding subunit Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 406100 - 408640 bp Length : 2541 bp Strand : - Note : similar to GP:7189244; identified by sequence similarity DNA sequence : ATGTTTGAGAAGTTTACTAACAGAGCCAAACAGGTCATTAAATTGGCTAAAAAAGAAGCTCAGAGGTTAAATCATAACTA TCTAGGCACAGAGCATATACTCTTAGGCCTACTCAAATTAGGCCAAGGAGTAGCTGTAAATGTATTGCGTAATTTAGGGG TAGACTTCGATACGGCAAAGCAAGAAGTCGAGAGACTAATTGGCTACGGCCCAGAAATTCAAGTCTATGGCGACCCTGCC CTTACTGGGAGGGTGAAAAAATCTTTTGAATCTGCAAATGAAGAAGCCGGGGTTTTAGAACACAATTATGTAGGTACCGA GCATCTTCTTTTAGGGATTTTAAATCAGGCTGACGGTGTTGCTTTACAAGTTCTAGAAAATTTACATATTGATCCTAGAG AAGTTCGCAAAGAAATTCTTAAAGAGCTCGAAACATTCAATCTTCAACTTCCTCCTTCATCTTCTTCTAATCCTCGAGGA AGTTCCTCTTCTTCTTCTAAATCTTCCTCTTTAGGTCATGCCTTAGGTGGAGAAAAAAGTGATAAGTTATCGGCATTAAA AGCCTATGGCTATGACTTAACAGAGATGTTTCGCGAGTCTAAGCTTGATCCTGTTATTGGTCGATCTGCAGAAGTTGAAC GTTTAATTTTAATCCTTTGCCGTAGAAGAAAAAACAATCCCGTGCTTATCGGTGAAGCCGGTGTAGGGAAAACGGCTATT GTTGAAGGATTAGCACAGAAAATTATTTCTAATGAAGTGCCCGATACTTTACGTAAGAAGCGTTTGATTACTTTAGATCT TGCTTTAATGATTGCCGGAACGAAATACCGTGGGCAATTTGAAGAACGTATCAAAGCTGTTATGGACGAAGTCCGCAAAC ATGGAAACATCCTTTTATTTATCGATGAGCTGCATACTATTGTAGGTGCTGGAGCTGCTGAAGGCGCTATTGATGCTTCA AATATTTTAAAACCTGCATTAGCGCGTGGAGAAATCCAGTGTATCGGAGCAACAACGATTGATGAATATCGCAAGCACAT TGAAAAAGATGCTGCTTTAGAACGTAGATTCCAAAAAATTATCGTCCAGCCACCTAGTGTAGATGAAACTATAGAAATCC TACGTGGATTGAAGAAGAAATACGAAGAACATCACAACGTGGCGATTACTGAAGAAGCTTTGAAAGCAGCAGCAACGTTA TCCGATCAATATGTTCATGGGCGTTTCCTTCCAGATAAGGCTATTGACCTACTTGATGAAGCTGGAGCACGCGTACGAGT GAATACCATGGATCAGCCTACAGAGTTAATGAAACTCGAAGCTGAGATCGAAACTACGAAACTAGCTAAAGAGCAAGCTA TCGGCACTCAAGAATACGAGAAAGCTGCAGGATTGCGTGATGAGGAGAAAAAGCTTCGTGAACGTCTTTCCAATATGAAG CAAGAATGGGAAAATCATAAAGAAGAGCATCAGATTCCTGTAGATGAAGAAGCTGTTGCTCAAGTGGTCTCCTTACAAAC AGGAATTCCTTCAGCAAGACTTACTGAAGCAGAAAGTGAGAAACTACTTAAATTAGAAGATACCCTACGTAAAAAAGTCA TTGGCCAGGATCAAGCTGTAAAAAGTATTTGCCGTGCTATCCGTCGTTCAAGAACAGGCATTAAAGATCCTAATCGTCCT ACAGGTTCCTTCTTATTCTTAGGTCCTACAGGGGTCGGGAAAACATTACTCGCTCAACAAATTGCTATCGAGATGTTTGG CGGTGAGGATGCCTTAATTCAAGTAGACATGTCTGAATACATGGAAAAATTTGCAGCTACGAAAATGATGGGGTCACCTC CAGGATATGTTGGACATGAGGAAGGTGGTCATCTTACTGAGCAAGTGCGTCGTCGGCCTTATTGCGTTGTTCTATTCGAT GAGATTGAGAAAGCGCACCCCGATATTATGGACTTGATGTTGCAGATTCTTGAACAAGGACGTCTCACAGATTCCTTCGG TCGTAAGATTGATTTCCGTCATGCAATTATTATCATGACGTCTAACTTAGGTGCAGACTTAATTAAGAAAAGCGGAGAAA TCGGTTTTGGGTCTCGATCGAATTTTGACTATAAAGTGATTCAAGAAAAAATCGAGAATGCTGTTAAGAAGCATTTAAAA CCGGAGTTTATCAACCGTTTAGATGAAAGTGTTATCTTCCGTCCTTTAGAGAAAGATGCTCTATCTGAAATTATCCATTT AGAAATTAACAAACTGGATTCCCGTTTGAAAAATTACCAAATGGCGTTAAGTATTCCCGACTCAGTGATTTCTTTCTTGG TTACAAAAGGACATTCTCCAGAAATGGGGGCACGACCTCTACGTCGTGTTATTGAGCAGTATCTTGAAGATCCTCTTGCA GAACTTTTGCTTAAGGAGTCTTGTCGTCAAGAAGCACGAAAACTTCGTGCTCGTCTTTCTGAAGATCGCGTTACTTTTGA ACGCGATGAAGCGCAAGAAACTGAAAGCGTCGCAGCGGCTATACCTAATGGGGAGTCATAG Protein sequence : MFEKFTNRAKQVIKLAKKEAQRLNHNYLGTEHILLGLLKLGQGVAVNVLRNLGVDFDTAKQEVERLIGYGPEIQVYGDPA LTGRVKKSFESANEEAGVLEHNYVGTEHLLLGILNQADGVALQVLENLHIDPREVRKEILKELETFNLQLPPSSSSNPRG SSSSSSKSSSLGHALGGEKSDKLSALKAYGYDLTEMFRESKLDPVIGRSAEVERLILILCRRRKNNPVLIGEAGVGKTAI VEGLAQKIISNEVPDTLRKKRLITLDLALMIAGTKYRGQFEERIKAVMDEVRKHGNILLFIDELHTIVGAGAAEGAIDAS NILKPALARGEIQCIGATTIDEYRKHIEKDAALERRFQKIIVQPPSVDETIEILRGLKKKYEEHHNVAITEEALKAAATL SDQYVHGRFLPDKAIDLLDEAGARVRVNTMDQPTELMKLEAEIETTKLAKEQAIGTQEYEKAAGLRDEEKKLRERLSNMK QEWENHKEEHQIPVDEEAVAQVVSLQTGIPSARLTEAESEKLLKLEDTLRKKVIGQDQAVKSICRAIRRSRTGIKDPNRP TGSFLFLGPTGVGKTLLAQQIAIEMFGGEDALIQVDMSEYMEKFAATKMMGSPPGYVGHEEGGHLTEQVRRRPYCVVLFD EIEKAHPDIMDLMLQILEQGRLTDSFGRKIDFRHAIIIMTSNLGADLIKKSGEIGFGSRSNFDYKVIQEKIENAVKKHLK PEFINRLDESVIFRPLEKDALSEIIHLEINKLDSRLKNYQMALSIPDSVISFLVTKGHSPEMGARPLRRVIEQYLEDPLA ELLLKESCRQEARKLRARLSEDRVTFERDEAQETESVAAAIPNGES |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 51 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | NP_829225.1 | ATP-dependent Clp protease, ATP-binding subunit | VFG0079 | Protein | 0.0 | 52 |
| clpC | NP_829225.1 | ATP-dependent Clp protease, ATP-binding subunit | VFG0080 | Protein | 1e-145 | 49 |
