|
Name : hrcV (RSp0863) Accession : NP_522424.1 Strain : Genome accession: NC_003296 Putative virulence/resistance : Virulence Product : hypothetical protein Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4789 EC number : - Position : 1089650 - 1091722 bp Length : 2073 bp Strand : - Note : predicted by Codon_usage; predicted by Homology; predicted by FrameD DNA sequence : ATGGCCAAAAAGAATGCAATCCAGGATTTCAGCGGCGAAATCGGTATCGCCGCGCTAGTGGTGGCGGTGGTGGCGCTGAT GGTGCTGCCGCTGCCGACCATGCTGATCGACGCGCTGCTCGGTCTGAACATCACGCTCTCGGTCGTGCTGCTGATGGTGA CGATGTACATTCCGTCGGCGACCTCGCTGTCGGCGTTTCCGTCGCTGCTGCTGTTCACGACGCTGCTGCGGCTGTCGCTG AACATCGCCTCCACCAAGTCCATTCTGCTGCACGCGGACGCCGGCCACATCATCGAGAGCTTCGGCAAGCTGGTGGTGGG CGGCAACCTGGTGGTGGGCCTGGTGGTGTTCCTGATCATCACCACGGTGCAGTTCATCGTGATCGCCAAGGGTTCGGAGC GCGTGGCCGAGGTCGGCGCGCGCTTCACGCTGGACGCCATGCCCGGCAAGCAGATGAGCATCGACGCCGACCTGCGCGCC GGCCACCTGTCGCCCGAAGAGGCCCGCAAGCGCCGCGCGCTGCTGGCGATGGAGAGCCAGCTGCACGGCGGCATGGACGG CGCCATGAAGTTCGTCAAGGGCGACGCCATCGCCGGCCTGGTCATCACGCTGGTCAACATCCTGGCCGGCATCGTGATCG GCATCACGTACCACAACATGACCGCCGGCGAGGCGGCCAACCGCTTCGCGGTGCTGTCGATCGGCGACGCCATGGTCTCG CAGATCCCGTCGCTGCTGATCTCGGTGGCGGCCGGCGTGATGATCACCCGCGTCTCCGACGAAGAGCAGGCCCACAAGCA GTCGTCGCTGGGCATGGAGATCGTGCGGCAGCTGTCCACCAGCGCGCGCGCCATGTTCACCGCCAGCGCCCTGCTGATGG GCTTCGCGCTGGTGCCGGGCTTTCCGTCGTTCCTGTTCGTCGCGCTGGCGACGCTGATCTTCGTGTTCGGCTACACGCTG CGCAACCGCGCCAAGGAGGGCGACGGCGACGAAGGCGACGCCCTGCCCGCGCTGCTGCGCGAGGGCTCGAAGGGCAAGGC GCCGACCATCGCCGAACAGGCCCCGTCGTTTACCGTGCCGGTGGGCGTGCGGCTCGGCGCGGAGCTGGCCAAGGGCCTGG ACGTGCCCGCCCTCGATACCGCCTTCCAGCAGGGCCGCCACGCGCTGGCCGAAGCGCTCGGCCTGCCCTTCCCCGGCATC GCGATCTGGAAGGCCGACGCCCTGCAGCCCGACAGCTACGAGGTGCGCGTGCACGATATCCCGGGCGAGCCGGTCGCGGT GCCGGACGGCCATCTGCTGATCCCGGATCTGCCGGAGGCGCTGCGCGCGCAGGCGGTCGAGGCCGCGGGCCTGCCCAATC ATCCGGCGCCGCACTGGATCGCGCCGGCCCACGTGGCCCAGGACGCGGCGCTGAGCGCCACCGGCCAGCGCGTGGAGCGC GTGATCGCCGATCACGTCGTGCACGTGCTGCGCCGGAGTGCGCACCTGTTCGTCGGCCTGCAGGAAACGCAGTGGATGCT CGAGCGCGTCACCACCGACTACCCCGGCCTGGTGGCCGAAGCGCAGAAGGCCGTGCCGGCCCAGCGGATCGCCGACGTGC TGCGGCGCCTGCTGGAAGAGCAGGTGCCCATCCGCAACATGCGCGCCATTCTCGAGAGCCTGGTGGTCTGGGGCCCGAAG GAGAAGGACACGCTGATGCTGGTGGAATACGTGCGCGGCGACCTGGGACGGCAGATCGCGCACCAGGCCACCGGCGGCAC CCGCCAGATGCCGGCCATCCTGCTGGACCTGTCGGTCGAGCAGACCGTGCGCCAGGCCATCAAGCCGACGCCGGCGGGCA ACTTCCTGACGCTCGATCCGCAGCAGGTGGAGGCCATCATCATGCGCCTGCGCGGCATCATGCAGGGCAACCCCGTCGAG ACGCCCTCGGCGCTGGCCATCGTGACCTCGATGGACATCCGCCGCTATGTCCGGCGCATGATCGAGCCGCACCTGCAGGC GCTGAACGTGTATTCGTTCCAGGAGCTTGGCGGCTACGTCGACCTGCGCCCGGTCGGCAAGCTGGTGCTGTAG Protein sequence : MAKKNAIQDFSGEIGIAALVVAVVALMVLPLPTMLIDALLGLNITLSVVLLMVTMYIPSATSLSAFPSLLLFTTLLRLSL NIASTKSILLHADAGHIIESFGKLVVGGNLVVGLVVFLIITTVQFIVIAKGSERVAEVGARFTLDAMPGKQMSIDADLRA GHLSPEEARKRRALLAMESQLHGGMDGAMKFVKGDAIAGLVITLVNILAGIVIGITYHNMTAGEAANRFAVLSIGDAMVS QIPSLLISVAAGVMITRVSDEEQAHKQSSLGMEIVRQLSTSARAMFTASALLMGFALVPGFPSFLFVALATLIFVFGYTL RNRAKEGDGDEGDALPALLREGSKGKAPTIAEQAPSFTVPVGVRLGAELAKGLDVPALDTAFQQGRHALAEALGLPFPGI AIWKADALQPDSYEVRVHDIPGEPVAVPDGHLLIPDLPEALRAQAVEAAGLPNHPAPHWIAPAHVAQDAALSATGQRVER VIADHVVHVLRRSAHLFVGLQETQWMLERVTTDYPGLVAEAQKAVPAQRIADVLRRLLEEQVPIRNMRAILESLVVWGPK EKDTLMLVEYVRGDLGRQIAHQATGGTRQMPAILLDLSVEQTVRQAIKPTPAGNFLTLDPQQVEAIIMRLRGIMQGNPVE TPSALAIVTSMDIRRYVRRMIEPHLQALNVYSFQELGGYVDLRPVGKLVL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| XC_3013 | YP_244081.1 | HrcV protein | Virulence | Hrp PAI | Protein | 6e-142 | 58 |
| hrcV | NP_636603.1 | protein HrcV | Virulence | Hrp PAI | Protein | 6e-142 | 58 |
| hrcV | AAP34346.1 | HrcV | Virulence | Hrp PAI | Protein | 3e-140 | 57 |
| hrcV | YP_362156.1 | HrcV protein | Virulence | Hrp PAI | Protein | 7e-140 | 57 |
| hrcV | BAB07859.1 | HrcV | Virulence | Hrp PAI | Protein | 2e-138 | 57 |
| hrcV | YP_198723.1 | protein HrcV | Virulence | Hrp PAI | Protein | 3e-138 | 57 |
| hrcV | NP_640760.1 | HrcV protein | Virulence | Hrp PAI | Protein | 3e-140 | 57 |
| lssD | AAO18050.1 | LssD | Virulence | TTSS locus | Protein | 2e-118 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| hrcV | NP_522424.1 | hypothetical protein | VFG0064 | Protein | 2e-116 | 46 |
| hrcV | NP_522424.1 | hypothetical protein | VFG0198 | Protein | 8e-110 | 45 |
| hrcV | NP_522424.1 | hypothetical protein | VFG0384 | Protein | 7e-111 | 42 |
