Gene Information

Name : tISRso10a (RSp0566)
Accession : NP_522127.1
Strain :
Genome accession: NC_003296
Putative virulence/resistance : Unknown
Product : transposase ISRSO10
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2963
EC number : -
Position : 707962 - 708330 bp
Length : 369 bp
Strand : +
Note : predicted by Codon_usage; predicted by Homology

DNA sequence :
GTGATGGAAGTGTTGACGGGCCCGGAGCGCCGCCGGCGGTGGTCGGTGGAAGAGAAGCTTGCGCTGGTCAGGGAGAGCTT
CGAGCCGGGCAAGACGGTCTCGATGGTGGCGCGCCAGCACGGCGTGAATCCGAATCAGGTGTTCCACTGGCGCAAGCTGT
ACCAGGACGGGAGCCTGTCGGCGGTGAGTGCGGGCGAGGAAGTGGTGCCGGCTTCGGAGTTGGCCGAGGCGCTCAAGCTA
GTCCGTGTGCTGCAGCGCATGCTCGGCAAGAAGACGATGGAGAACGAGATTCTTCGCGAAGCCGTGGAATACGGTCGGGC
AAAAAAGTGGATTGCGCGCTCGCCATCGCTGCCGGGGGACGACCAGTGA

Protein sequence :
MMEVLTGPERRRRWSVEEKLALVRESFEPGKTVSMVARQHGVNPNQVFHWRKLYQDGSLSAVSAGEEVVPASELAEALKL
VRVLQRMLGKKTMENEILREAVEYGRAKKWIARSPSLPGDDQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
st02 CAC81840.1 ST02 protein Not tested LEE II Protein 2e-39 69
ECO26_5247 YP_003232129.1 insertion sequence 2 OrfA protein Not tested LEE Protein 3e-39 69
S3188 NP_838471.2 insertion sequence 2 OrfA protein Not tested SHI-1 Protein 3e-39 69
S4060 NP_839229.2 insertion sequence 2 OrfA protein Not tested SHI-2 Protein 3e-39 69
S4049 NP_839217.2 insertion sequence 2 OrfA protein Not tested SHI-2 Protein 9e-39 69
tnpG AAD44740.1 TnpG Not tested SHI-2 Protein 2e-39 69
unnamed AAL57520.1 IS2 transposase Not tested LEE Protein 2e-39 69
aec50 AAW51733.1 Aec50 Not tested AGI-3 Protein 2e-39 69
SF2984 NP_708758.3 IS2 ORF1 Not tested SHI-1 Protein 3e-39 69
SF3709 NP_709448.3 IS2 ORF1 Not tested SHI-2 Protein 8e-39 69
SF3722 NP_709461.3 IS2 ORF1 Not tested SHI-2 Protein 8e-39 69
unnamed AAL67376.1 insertion sequence protein Not tested PAI II CFT073 Protein 2e-26 68
insC YP_002414034.1 IS2 insertion element repressor InsA; KpLE2 phage-like element Not tested Not named Protein 3e-26 68
insC YP_854262.1 IS2 transposase Not tested PAI I APEC-O1 Protein 7e-26 64
c5196 NP_757044.1 transposase insC Not tested PAI II CFT073 Protein 7e-26 64
insC AAZ04431.1 IS2 conserved hypothetical protein Not tested PAI I APEC-O1 Protein 5e-26 64

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tISRso10a NP_522127.1 transposase ISRSO10 VFG0648 Protein 8e-40 69
tISRso10a NP_522127.1 transposase ISRSO10 VFG0622 Protein 2e-39 69
tISRso10a NP_522127.1 transposase ISRSO10 VFG0609 Protein 2e-39 69
tISRso10a NP_522127.1 transposase ISRSO10 VFG1733 Protein 9e-27 68