Gene Information

Name : tISRso6b (RSp0452)
Accession : NP_522013.1
Strain :
Genome accession: NC_003296
Putative virulence/resistance : Unknown
Product : transposase/IS protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG1484
EC number : -
Position : 563974 - 564819 bp
Length : 846 bp
Strand : +
Note : predicted by Codon_usage; predicted by Homology; predicted by FrameD

DNA sequence :
ATGACGCCTCAGCTCGAACGGCTCACCGTCCTGTGCCAGCAGCTCAACCTGCAGCACCTTCCCACACAGCTCGCCCACCT
GGGCCAGATGGCGGCCAAGCGGGAGCTCGGCTACCTGGACTTCCTTGAGCACGCCTTGAAGGACGAAGCCATGGCGCGGG
CCGAGCGCATGCGACGAACGCTGACACGATTGGCCGGCTTCCCGGCGATCAAGACCTTGGACGAGTTCGACTTCGAGTTC
GCAACCGGCGTGCCGAAGGCGATGGTCCTGGAGTTGGGCAGCCTTGCATTCGTTGAGCGAGCCGAGAACGTGGTGCTGCT
CGGACCTTCCGGCGTGGGGAAGACCCACCTGGCGATCGCCCTGGGCTATCGCGCCACGCAGGCCGGCATGCGGACGCGGT
TCATCACGGCGGCCGATCTGCTGATGCAACTTGCAGCCGCCCTGCAGCGGAACCAGCTCGATGTCGCCATCAAGCGCATT
GTGAATCCCTACAAGCTCTTGATCGTTGACGAGATGGGCTACCTGCCGATGGACCGAGAACAAGCCAATCTACTGTTCCA
GGTCATTGCTAAGCGGTATGAAACCGGAAGCTTGGTGCTGACGAGCAATCTGCCCTTCGGTCAATGGGATCAGACCTTTG
CTGGCGACGCCACGCTCACTGCCGCTCTGCTAGATCGCCTGCTGCATCACGCGCACGTTGTGCCGATCTCCGGCGACTCG
TACCGACTGAAGGAGAAGCGCCAGGCGGGCATGATCCATCGAATGTCGCTGTCGAATCCTGTGCCCGACGACCTCAAACG
CAAACGCATTCCAAAGGAGCCACCGCCCAGCCACCCGATGCAATAA

Protein sequence :
MTPQLERLTVLCQQLNLQHLPTQLAHLGQMAAKRELGYLDFLEHALKDEAMARAERMRRTLTRLAGFPAIKTLDEFDFEF
ATGVPKAMVLELGSLAFVERAENVVLLGPSGVGKTHLAIALGYRATQAGMRTRFITAADLLMQLAAALQRNQLDVAIKRI
VNPYKLLIVDEMGYLPMDREQANLLFQVIAKRYETGSLVLTSNLPFGQWDQTFAGDATLTAALLDRLLHHAHVVPISGDS
YRLKEKRQAGMIHRMSLSNPVPDDLKRKRIPKEPPPSHPMQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
y1093 CAC43411.1 IS100 transposase; transposase ORFA Not tested PAI III 536 Protein 7e-51 58
unnamed CAB46598.1 IS100 transposase Not tested HPI Protein 7e-51 58
s0036 CAD33774.1 ORF B protein Not tested PAI I 536 Protein 7e-51 58
y1093 CAD42087.1 OrfB protein of IS100 transposase Not tested PAI II 536 Protein 7e-51 58
orfB CAE85183.1 OrfB protein, transposase, IS100 Not tested PAI V 536 Protein 7e-51 58
YPTB1586 YP_070114.1 transposase/IS protein Not tested HPI Protein 9e-51 58
api84 CAF28558.1 putative transposase Not tested YAPI Protein 7e-51 58
unnamed CAA21402.1 - Not tested HPI Protein 9e-51 58
YPO1901 YP_002346891.1 transposase/IS protein Not tested HPI Protein 8e-51 58
aec58 AAW51741.1 Aec58 Not tested AGI-3 Protein 2e-51 58
y2410 NP_669717.1 transposase/IS protein Not tested HPI Protein 8e-51 58
y1093 CAD66188.1 transposase Orf B, insertion element IS100 Not tested PAI III 536 Protein 9e-51 57

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tISRso6b NP_522013.1 transposase/IS protein VFG1606 Protein 4e-51 58
tISRso6b NP_522013.1 transposase/IS protein VFG1515 Protein 4e-51 58
tISRso6b NP_522013.1 transposase/IS protein VFG1627 Protein 4e-51 58
tISRso6b NP_522013.1 transposase/IS protein VFG1663 Protein 5e-51 57